| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g07348 | 5:358,661-367,097 | + | C2H5g18074 | CX5g037999 | LOC_Os05g01690 | Os05g0107300 | - | Detail |
| C1H5g18030 | 5:369,428-381,333 | - | C2H5g27472 | CX5g038302 | LOC_Os05g01700 | Os05g0107600 | - | Detail |
| C1H5g19380 | 5:385,533-391,214 | + | C2H5g16843 | CX5g040021 | LOC_Os05g01710 | Os05g0107700 | - | Detail |
| C1H5g20325 | 5:395,300-397,340 | + | C2H5g11892 | CX5g040582 | LOC_Os05g01730 | Os05g0107900 | - | Detail |
| C1H5g28813 | 5:397,625-402,062 | - | C2H5g21168 | CX5g040580 | LOC_Os05g01750 | Os05g0108000 | - | Detail |
| C1H5g21368 | 5:402,500-406,747 | - | C2H5g06480 | CX5g039887 | LOC_Os05g01760 | Os05g0108100 | - | Detail |
| C1H5g15185 | 5:412,808-417,692 | + | C2H5g09053 | CX5g039387 | LOC_Os05g01780 | Os05g0108300 | - | Detail |
| C1H5g01513 | 5:422,952-425,344 | + | C2H5g04330 | CX5g040070 | LOC_Os05g10980 | Os05g0198700 | - | Detail |
| C1H5g26822 | 5:427,446-429,698 | + | C2H5g29127 | CX5g038883 | LOC_Os05g01810 | Os05g0108600 | - | Detail |
| C1H5g12608 | 5:431,602-433,521 | + | C2H5g11304 | CX5g039990 | LOC_Os05g01820 | Os05g0108800 | - | Detail |
| C1H5g12767 | 5:434,339-435,316 | - | C2H5g10600 | CX5g040088 | LOC_Os05g01900 | Os05g0109100 | - | Detail |
| C1H5g28978 | 5:436,040-438,379 | - | C2H5g20027 | CX5g040088 | LOC_Os05g01830 | Os05g0109100 | - | Detail |
| C1H5g13270 | 5:447,432-453,478 | - | C2H5g16158 | CX5g040571 | LOC_Os05g01910 | Os05g0109600 | - | Detail |
| C1H5g31686 | 5:478,568-478,963 | + | C2H5g30479 | - | LOC_Os05g01950 | Os05g0110100 | - | Detail |
| C1H5g07744 | 5:487,086-496,510 | + | C2H5g05509 | CX5g039239 | LOC_Os05g01970 | Os05g0110300 | - | Detail |
| C1H5g08931 | 5:489,777-491,591 | - | C2H5g14884 | CX5g037835 | - | Os05g0574900 | OsSLRL2 | Detail |
| C1H5g02397 | 5:497,912-503,703 | + | C2H5g28803 | CX5g040128 | LOC_Os05g01990 | Os05g0110500 | OsRH17 | Detail |
| C1H5g00170 | 5:504,039-505,463 | - | C2H5g24617 | CX5g039122 | LOC_Os05g01994 | Os05g0110600 | - | Detail |
| C1H5g17204 | 5:506,122-509,720 | - | C2H5g17611 | CX5g039191 | LOC_Os01g74170 | Os05g0110700 | - | Detail |
| C1H5g02164 | 5:510,904-513,298 | + | C2H5g11449 | CX5g037548 | LOC_Os05g02010 | Os05g0110800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000448 | 1:31,974,104-31,977,662 | - | C1H1g17963 | C2H1g11723 | LOC_Os01g62244 | Os01g0839700 | - | Detail |
| CX1g004572 | 1:31,983,450-31,984,082 | - | - | - | - | - | - | Detail |
| CX1g000114 | 1:31,987,937-31,990,882 | + | C1H1g20143 | C2H1g09224 | LOC_Os01g62290 | Os01g0840100 | cHsp70-1 | Detail |
| CX1g000325 | 1:31,992,529-31,993,854 | - | C1H1g19514 | C2H1g21773 | LOC_Os01g62300 | Os01g0840200 | - | Detail |
| CX1g001065 | 1:32,007,776-32,010,008 | - | C1H1g29893 | C2H1g18215 | LOC_Os01g62310 | Os01g0840300 | - | Detail |
| CX1g000771 | 1:32,011,605-32,011,787 | + | - | - | - | - | - | Detail |
| CX1g004150 | 1:32,017,995-32,019,520 | - | C1H1g17139 | C2H1g18392 | LOC_Os01g62350 | Os01g0840700 | - | Detail |
| CX1g003133 | 1:32,025,722-32,026,866 | + | C1H1g12130 | C2H1g21625 | LOC_Os01g62370 | Os01g0841000 | - | Detail |
| CX1g001868 | 1:32,032,417-32,033,691 | - | C1H1g21585 | C2H5g15850 | LOC_Os01g62380 | Os01g0841100 | - | Detail |
| CX1g005410 | 1:32,036,366-32,041,086 | - | C1H1g08278 | C2H1g18206 | LOC_Os01g62390 | Os01g0841200 | - | Detail |
| CX1g006283 | 1:32,049,379-32,053,737 | + | C1H1g27442 | C2H1g01645 | LOC_Os01g62410 | Os01g0841500 | OsMYB3R-2, OsMYB3R2, MYB3R2 | Detail |
| CX1g001946 | 1:32,055,071-32,057,839 | + | C1H1g29013 | C2H1g14112 | LOC_Os01g62420 | Os01g0841600 | OscTPI | Detail |
| CX1g000812 | 1:32,062,627-32,063,733 | + | C1H1g20425 | C2H1g22797 | LOC_Os01g62430 | Os01g0841700 | OsERG1, OsERG1a, Rpp17-1 | Detail |
| CX1g005408 | 1:32,064,960-32,071,927 | - | C1H1g09787 | C2H1g16312 | LOC_Os01g62440 | Os01g0841800 | - | Detail |
| CX1g003735 | 1:32,085,044-32,087,506 | + | C1H1g04968 | C2H1g22514 | LOC_Os01g62460 | Os01g0842200 | - | Detail |
| CX1g004737 | 1:32,092,631-32,095,252 | - | C1H1g14751 | C2H1g04788 | LOC_Os01g62480 | Os01g0842400 | - | Detail |
| CX1g005658 | 1:32,104,302-32,106,550 | - | C1H1g07793 | C2H1g08845 | LOC_Os01g62490 | Os01g0842500 | - | Detail |
| CX1g000259 | 1:32,109,280-32,114,376 | - | C1H1g12370 | C2H1g06756 | LOC_Os01g62500 | Os01g0842600 | - | Detail |
| CX1g006004 | 1:32,115,294-32,120,372 | - | C1H1g15936 | C2H1g03150 | LOC_Os01g62514 | Os01g0842801 | - | Detail |
| CX1g006531 | 1:32,129,291-32,130,393 | - | C1H1g02981 | C2H6g28684 | LOC_Os01g31750 | Os01g0595300 | - | Detail |