| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g00221 | 4:16,654,068-16,657,405 | - | - | - | - | - | - | Detail |
| C1H4g00621 | 4:16,659,035-16,662,449 | + | C2H4g20464 | - | LOC_Os04g32220 | Os04g0393200 | - | Detail |
| C1H4g11686 | 4:16,672,123-16,672,608 | + | C2H4g13351 | - | LOC_Os04g32250 | Os04g0393100 | - | Detail |
| C1H4g20056 | 4:16,673,986-16,676,441 | + | C2H4g20464 | - | LOC_Os04g32250 | Os04g0393100 | - | Detail |
| C1H4g08605 | 4:16,680,567-16,684,626 | - | C2H4g11378 | CX4g036058 | LOC_Os04g32270 | Os04g0393300 | - | Detail |
| C1H4g12865 | 4:16,710,219-16,715,569 | + | C2H4g10960 | CX4g034279 | LOC_Os04g32310 | Os04g0393900 | - | Detail |
| C1H4g06922 | 4:16,720,019-16,723,230 | + | C2H4g18193 | CX4g034392 | LOC_Os04g32320 | Os04g0394100 | - | Detail |
| C1H4g17845 | 4:16,725,013-16,729,329 | + | C2H4g16524 | CX4g035538 | LOC_Os04g32330 | Os04g0394200 | - | Detail |
| C1H4g05869 | 4:16,729,859-16,737,578 | - | C2H4g25961 | CX4g034536 | LOC_Os04g32340 | Os04g0394300 | - | Detail |
| C1H4g02701 | 4:16,741,767-16,749,994 | - | C2H4g27874 | CX4g036042 | LOC_Os04g32350 | Os04g0394500 | DGS1, RPC4 | Detail |
| C1H4g04290 | 4:16,760,267-16,767,220 | + | C2H4g13468 | CX4g032930 | LOC_Os04g32370 | Os04g0394700 | - | Detail |
| C1H4g22256 | 4:16,783,814-16,788,244 | - | C2H4g07831 | CX4g033841 | LOC_Os04g32460 | Os04g0395600 | - | Detail |
| C1H4g04595 | 4:16,805,450-16,806,705 | - | - | - | - | - | - | Detail |
| C1H4g21629 | 4:16,809,914-16,810,450 | - | C2H4g01216 | CX4g036177 | LOC_Os04g32470 | Os04g0395700 | - | Detail |
| C1H4g00131 | 4:16,823,498-16,827,263 | + | C2H4g05465 | CX4g033931 | LOC_Os04g32480 | Os04g0395800 | - | Detail |
| C1H4g20584 | 4:16,829,647-16,835,344 | - | C2H4g15362 | CX4g035337 | LOC_Os04g32490 | Os04g0395900 | - | Detail |
| C1H4g10776 | 4:16,899,462-16,911,243 | + | C2H4g27206 | CX4g031625 | LOC_Os04g32510 | Os04g0396500 | LAX2 | Detail |
| C1H4g30291 | 4:16,928,629-16,932,405 | + | C2H4g12362 | CX4g032605 | LOC_Os04g32540 | Os04g0396800 | - | Detail |
| C1H4g11763 | 4:16,937,937-16,939,103 | + | C2H4g11756 | CX4g036117 | LOC_Os04g32550 | Os04g0397000 | - | Detail |
| C1H4g04793 | 4:16,940,329-16,946,897 | - | C2H4g07574 | CX4g034837 | LOC_Os04g32560 | Os04g0397100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000448 | 1:31,974,104-31,977,662 | - | C1H1g17963 | C2H1g11723 | LOC_Os01g62244 | Os01g0839700 | - | Detail |
| CX1g004572 | 1:31,983,450-31,984,082 | - | - | - | - | - | - | Detail |
| CX1g000114 | 1:31,987,937-31,990,882 | + | C1H1g20143 | C2H1g09224 | LOC_Os01g62290 | Os01g0840100 | cHsp70-1 | Detail |
| CX1g000325 | 1:31,992,529-31,993,854 | - | C1H1g19514 | C2H1g21773 | LOC_Os01g62300 | Os01g0840200 | - | Detail |
| CX1g001065 | 1:32,007,776-32,010,008 | - | C1H1g29893 | C2H1g18215 | LOC_Os01g62310 | Os01g0840300 | - | Detail |
| CX1g000771 | 1:32,011,605-32,011,787 | + | - | - | - | - | - | Detail |
| CX1g004150 | 1:32,017,995-32,019,520 | - | C1H1g17139 | C2H1g18392 | LOC_Os01g62350 | Os01g0840700 | - | Detail |
| CX1g003133 | 1:32,025,722-32,026,866 | + | C1H1g12130 | C2H1g21625 | LOC_Os01g62370 | Os01g0841000 | - | Detail |
| CX1g001868 | 1:32,032,417-32,033,691 | - | C1H1g21585 | C2H5g15850 | LOC_Os01g62380 | Os01g0841100 | - | Detail |
| CX1g005410 | 1:32,036,366-32,041,086 | - | C1H1g08278 | C2H1g18206 | LOC_Os01g62390 | Os01g0841200 | - | Detail |
| CX1g006283 | 1:32,049,379-32,053,737 | + | C1H1g27442 | C2H1g01645 | LOC_Os01g62410 | Os01g0841500 | OsMYB3R-2, OsMYB3R2, MYB3R2 | Detail |
| CX1g001946 | 1:32,055,071-32,057,839 | + | C1H1g29013 | C2H1g14112 | LOC_Os01g62420 | Os01g0841600 | OscTPI | Detail |
| CX1g000812 | 1:32,062,627-32,063,733 | + | C1H1g20425 | C2H1g22797 | LOC_Os01g62430 | Os01g0841700 | OsERG1, OsERG1a, Rpp17-1 | Detail |
| CX1g005408 | 1:32,064,960-32,071,927 | - | C1H1g09787 | C2H1g16312 | LOC_Os01g62440 | Os01g0841800 | - | Detail |
| CX1g003735 | 1:32,085,044-32,087,506 | + | C1H1g04968 | C2H1g22514 | LOC_Os01g62460 | Os01g0842200 | - | Detail |
| CX1g004737 | 1:32,092,631-32,095,252 | - | C1H1g14751 | C2H1g04788 | LOC_Os01g62480 | Os01g0842400 | - | Detail |
| CX1g005658 | 1:32,104,302-32,106,550 | - | C1H1g07793 | C2H1g08845 | LOC_Os01g62490 | Os01g0842500 | - | Detail |
| CX1g000259 | 1:32,109,280-32,114,376 | - | C1H1g12370 | C2H1g06756 | LOC_Os01g62500 | Os01g0842600 | - | Detail |
| CX1g006004 | 1:32,115,294-32,120,372 | - | C1H1g15936 | C2H1g03150 | LOC_Os01g62514 | Os01g0842801 | - | Detail |
| CX1g006531 | 1:32,129,291-32,130,393 | - | C1H1g02981 | C2H6g28684 | LOC_Os01g31750 | Os01g0595300 | - | Detail |