| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g03562 | 4:12,928,133-12,928,405 | + | C2H4g20021 | - | - | Os04g0341100 | - | Detail |
| C1H4g19050 | 4:12,935,121-12,944,840 | - | C2H4g09454 | CX4g033674 | LOC_Os04g27340 | Os04g0340300 | OsTPS19 | Detail |
| C1H4g20792 | 4:12,968,531-12,971,065 | - | C2H4g13731 | CX4g034457 | LOC_Os04g27470 | Os04g0345400 | - | Detail |
| C1H4g05931 | 4:12,985,331-12,987,899 | - | C2H4g30131 | CX4g033401 | LOC_Os04g27430 | Os04g0342100 | OsSTPS2 | Detail |
| C1H4g04953 | 4:12,990,304-12,993,326 | - | C2H4g30131 | CX4g035836 | LOC_Os04g27430 | Os04g0342100 | OsSTPS2 | Detail |
| C1H4g10592 | 4:13,031,164-13,036,953 | - | C2H4g01920 | CX4g034334 | LOC_Os04g27540 | Os04g0345400 | - | Detail |
| C1H4g14729 | 4:13,081,514-13,083,682 | - | C2H4g22506 | CX4g034494 | LOC_Os04g27720 | Os04g0344100 | - | Detail |
| C1H4g01231 | 4:13,112,594-13,112,908 | - | C2H4g16931 | - | - | - | - | Detail |
| C1H4g17656 | 4:13,115,785-13,119,290 | - | C2H4g16931 | CX4g033401 | LOC_Os04g27790 | Os04g0345400 | - | Detail |
| C1H4g17126 | 4:13,128,022-13,130,078 | + | C2H4g12683 | CX4g036139 | LOC_Os11g08800 | - | - | Detail |
| C1H4g21918 | 4:13,135,371-13,139,973 | + | C2H4g23322 | CX4g036067 | LOC_Os04g27790 | Os04g0345400 | - | Detail |
| C1H4g23107 | 4:13,141,340-13,144,568 | - | - | CX4g033963 | - | - | - | Detail |
| C1H4g22755 | 4:13,144,706-13,146,638 | - | C2H4g27481 | - | - | - | - | Detail |
| C1H4g11276 | 4:13,155,482-13,159,609 | + | C2H4g05861 | CX4g034459 | LOC_Os04g27830 | Os04g0345800 | - | Detail |
| C1H4g11725 | 4:13,164,153-13,171,655 | + | C2H4g12493 | CX4g034468 | LOC_Os04g27850 | Os04g0346000 | - | Detail |
| C1H4g07589 | 4:13,176,401-13,176,930 | - | C2H4g15688 | CX4g032851 | - | - | - | Detail |
| C1H4g08073 | 4:13,180,391-13,181,755 | + | C2H4g22024 | CX4g034059 | LOC_Os04g27860 | Os04g0346100 | - | Detail |
| C1H4g22890 | 4:13,188,872-13,190,869 | + | C2H4g10199 | CX4g036065 | - | Os04g0346800 | - | Detail |
| C1H4g23098 | 4:13,198,680-13,202,442 | - | C2H4g07726 | CX4g036207 | LOC_Os04g27960 | Os04g0346900 | - | Detail |
| C1H4g05778 | 4:13,207,788-13,209,105 | - | C2H4g06173 | CX4g036626 | LOC_Os04g27980 | Os04g0347200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000448 | 1:31,974,104-31,977,662 | - | C1H1g17963 | C2H1g11723 | LOC_Os01g62244 | Os01g0839700 | - | Detail |
| CX1g004572 | 1:31,983,450-31,984,082 | - | - | - | - | - | - | Detail |
| CX1g000114 | 1:31,987,937-31,990,882 | + | C1H1g20143 | C2H1g09224 | LOC_Os01g62290 | Os01g0840100 | cHsp70-1 | Detail |
| CX1g000325 | 1:31,992,529-31,993,854 | - | C1H1g19514 | C2H1g21773 | LOC_Os01g62300 | Os01g0840200 | - | Detail |
| CX1g001065 | 1:32,007,776-32,010,008 | - | C1H1g29893 | C2H1g18215 | LOC_Os01g62310 | Os01g0840300 | - | Detail |
| CX1g000771 | 1:32,011,605-32,011,787 | + | - | - | - | - | - | Detail |
| CX1g004150 | 1:32,017,995-32,019,520 | - | C1H1g17139 | C2H1g18392 | LOC_Os01g62350 | Os01g0840700 | - | Detail |
| CX1g003133 | 1:32,025,722-32,026,866 | + | C1H1g12130 | C2H1g21625 | LOC_Os01g62370 | Os01g0841000 | - | Detail |
| CX1g001868 | 1:32,032,417-32,033,691 | - | C1H1g21585 | C2H5g15850 | LOC_Os01g62380 | Os01g0841100 | - | Detail |
| CX1g005410 | 1:32,036,366-32,041,086 | - | C1H1g08278 | C2H1g18206 | LOC_Os01g62390 | Os01g0841200 | - | Detail |
| CX1g006283 | 1:32,049,379-32,053,737 | + | C1H1g27442 | C2H1g01645 | LOC_Os01g62410 | Os01g0841500 | OsMYB3R-2, OsMYB3R2, MYB3R2 | Detail |
| CX1g001946 | 1:32,055,071-32,057,839 | + | C1H1g29013 | C2H1g14112 | LOC_Os01g62420 | Os01g0841600 | OscTPI | Detail |
| CX1g000812 | 1:32,062,627-32,063,733 | + | C1H1g20425 | C2H1g22797 | LOC_Os01g62430 | Os01g0841700 | OsERG1, OsERG1a, Rpp17-1 | Detail |
| CX1g005408 | 1:32,064,960-32,071,927 | - | C1H1g09787 | C2H1g16312 | LOC_Os01g62440 | Os01g0841800 | - | Detail |
| CX1g003735 | 1:32,085,044-32,087,506 | + | C1H1g04968 | C2H1g22514 | LOC_Os01g62460 | Os01g0842200 | - | Detail |
| CX1g004737 | 1:32,092,631-32,095,252 | - | C1H1g14751 | C2H1g04788 | LOC_Os01g62480 | Os01g0842400 | - | Detail |
| CX1g005658 | 1:32,104,302-32,106,550 | - | C1H1g07793 | C2H1g08845 | LOC_Os01g62490 | Os01g0842500 | - | Detail |
| CX1g000259 | 1:32,109,280-32,114,376 | - | C1H1g12370 | C2H1g06756 | LOC_Os01g62500 | Os01g0842600 | - | Detail |
| CX1g006004 | 1:32,115,294-32,120,372 | - | C1H1g15936 | C2H1g03150 | LOC_Os01g62514 | Os01g0842801 | - | Detail |
| CX1g006531 | 1:32,129,291-32,130,393 | - | C1H1g02981 | C2H6g28684 | LOC_Os01g31750 | Os01g0595300 | - | Detail |