| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g18372 | 3:19,110,823-19,111,940 | - | C2H3g08461 | CX3g026625 | LOC_Os03g36439 | Os03g0562200 | - | Detail |
| C1H3g09057 | 3:19,122,970-19,123,353 | - | C2H3g19324 | CX3g025527 | - | Os03g0562200 | - | Detail |
| C1H3g31570 | 3:19,192,838-19,196,906 | + | C2H3g18751 | CX3g030881 | LOC_Os03g36530 | Os03g0563100 | - | Detail |
| C1H3g17857 | 3:19,201,151-19,202,787 | - | C2H3g06195 | CX3g027657 | LOC_Os03g36540 | Os03g0563300 | ELL, OsCHLI | Detail |
| C1H3g29929 | 3:19,216,738-19,219,455 | + | C2H3g17553 | CX3g025994 | LOC_Os03g36560 | Os03g0563600 | - | Detail |
| C1H3g19117 | 3:19,220,085-19,220,581 | + | C2H3g01598 | CX3g025994 | LOC_Os03g36560 | Os03g0563600 | - | Detail |
| C1H3g14152 | 3:19,231,765-19,233,115 | - | C2H2g09097 | CX3g030156 | - | - | - | Detail |
| C1H3g27327 | 3:19,255,602-19,261,239 | + | C2H3g26291 | CX3g025101 | LOC_Os03g36630 | Os03g0564200 | - | Detail |
| C1H3g06313 | 3:19,267,141-19,267,881 | - | C2H3g01936 | CX3g026822 | LOC_Os03g36650 | Os03g0564600 | - | Detail |
| C1H3g28639 | 3:19,295,767-19,296,762 | - | C2H3g24254 | CX3g030746 | LOC_Os03g36730 | Os03g0565100 | - | Detail |
| C1H3g02915 | 3:19,306,387-19,313,640 | + | C2H3g16341 | CX3g030180 | LOC_Os03g36750 | Os03g0565200 | - | Detail |
| C1H3g22618 | 3:19,316,397-19,320,946 | + | C2H3g09325 | CX3g025334 | LOC_Os03g36760 | Os03g0565300 | - | Detail |
| C1H3g29496 | 3:19,329,990-19,344,671 | + | C2H3g16767 | CX3g030739 | LOC_Os03g36780 | Os03g0565500 | - | Detail |
| C1H3g13363 | 3:19,348,084-19,353,681 | - | C2H3g12114 | CX3g029595 | LOC_Os03g36790 | Os03g0565600 | - | Detail |
| C1H3g15819 | 3:19,360,543-19,361,495 | + | - | - | - | - | - | Detail |
| C1H3g22145 | 3:19,363,091-19,365,899 | - | C2H3g20304 | CX3g027738 | LOC_Os03g36830 | Os03g0565900 | - | Detail |
| C1H3g00076 | 3:19,392,001-19,392,820 | + | - | CX3g026652 | - | - | - | Detail |
| C1H3g03992 | 3:19,394,952-19,398,700 | - | C2H3g02382 | CX3g027468 | LOC_Os03g36900 | Os03g0566500 | - | Detail |
| C1H3g30925 | 3:19,403,215-19,405,542 | + | C2H3g13499 | CX3g026657 | LOC_Os03g36910 | Os03g0566600 | - | Detail |
| C1H3g18058 | 3:19,406,273-19,409,543 | - | C2H3g26454 | CX3g025200 | LOC_Os03g36920 | Os03g0566700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000448 | 1:31,974,104-31,977,662 | - | C1H1g17963 | C2H1g11723 | LOC_Os01g62244 | Os01g0839700 | - | Detail |
| CX1g004572 | 1:31,983,450-31,984,082 | - | - | - | - | - | - | Detail |
| CX1g000114 | 1:31,987,937-31,990,882 | + | C1H1g20143 | C2H1g09224 | LOC_Os01g62290 | Os01g0840100 | cHsp70-1 | Detail |
| CX1g000325 | 1:31,992,529-31,993,854 | - | C1H1g19514 | C2H1g21773 | LOC_Os01g62300 | Os01g0840200 | - | Detail |
| CX1g001065 | 1:32,007,776-32,010,008 | - | C1H1g29893 | C2H1g18215 | LOC_Os01g62310 | Os01g0840300 | - | Detail |
| CX1g000771 | 1:32,011,605-32,011,787 | + | - | - | - | - | - | Detail |
| CX1g004150 | 1:32,017,995-32,019,520 | - | C1H1g17139 | C2H1g18392 | LOC_Os01g62350 | Os01g0840700 | - | Detail |
| CX1g003133 | 1:32,025,722-32,026,866 | + | C1H1g12130 | C2H1g21625 | LOC_Os01g62370 | Os01g0841000 | - | Detail |
| CX1g001868 | 1:32,032,417-32,033,691 | - | C1H1g21585 | C2H5g15850 | LOC_Os01g62380 | Os01g0841100 | - | Detail |
| CX1g005410 | 1:32,036,366-32,041,086 | - | C1H1g08278 | C2H1g18206 | LOC_Os01g62390 | Os01g0841200 | - | Detail |
| CX1g006283 | 1:32,049,379-32,053,737 | + | C1H1g27442 | C2H1g01645 | LOC_Os01g62410 | Os01g0841500 | OsMYB3R-2, OsMYB3R2, MYB3R2 | Detail |
| CX1g001946 | 1:32,055,071-32,057,839 | + | C1H1g29013 | C2H1g14112 | LOC_Os01g62420 | Os01g0841600 | OscTPI | Detail |
| CX1g000812 | 1:32,062,627-32,063,733 | + | C1H1g20425 | C2H1g22797 | LOC_Os01g62430 | Os01g0841700 | OsERG1, OsERG1a, Rpp17-1 | Detail |
| CX1g005408 | 1:32,064,960-32,071,927 | - | C1H1g09787 | C2H1g16312 | LOC_Os01g62440 | Os01g0841800 | - | Detail |
| CX1g003735 | 1:32,085,044-32,087,506 | + | C1H1g04968 | C2H1g22514 | LOC_Os01g62460 | Os01g0842200 | - | Detail |
| CX1g004737 | 1:32,092,631-32,095,252 | - | C1H1g14751 | C2H1g04788 | LOC_Os01g62480 | Os01g0842400 | - | Detail |
| CX1g005658 | 1:32,104,302-32,106,550 | - | C1H1g07793 | C2H1g08845 | LOC_Os01g62490 | Os01g0842500 | - | Detail |
| CX1g000259 | 1:32,109,280-32,114,376 | - | C1H1g12370 | C2H1g06756 | LOC_Os01g62500 | Os01g0842600 | - | Detail |
| CX1g006004 | 1:32,115,294-32,120,372 | - | C1H1g15936 | C2H1g03150 | LOC_Os01g62514 | Os01g0842801 | - | Detail |
| CX1g006531 | 1:32,129,291-32,130,393 | - | C1H1g02981 | C2H6g28684 | LOC_Os01g31750 | Os01g0595300 | - | Detail |