| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g14797 | 9:3,849,747-3,850,022 | - | C1H9g01470 | CX9g056409 | LOC_Os09g08280 | Os09g0256700 | - | Detail |
| C2H9g00929 | 9:3,883,854-3,885,029 | + | - | CX9g056991 | LOC_Os09g08300 | Os09g0257000 | - | Detail |
| C2H9g19117 | 9:3,923,116-3,923,295 | - | - | CX9g057992 | - | Os09g0257900 | - | Detail |
| C2H9g08292 | 9:3,924,917-3,930,484 | - | C1H9g08547 | CX9g055604 | LOC_Os09g08390 | Os09g0258000 | - | Detail |
| C2H9g11852 | 9:3,974,154-3,977,742 | - | C1H9g28379 | CX9g055819 | LOC_Os09g08420 | Os09g0258500 | OsAGC16 | Detail |
| C2H9g03970 | 9:3,980,356-3,981,738 | - | C1H9g26801 | CX9g057750 | LOC_Os03g31134 | Os03g0424500 | - | Detail |
| C2H9g04994 | 9:3,985,680-3,987,896 | - | C1H9g07929 | CX9g054915 | LOC_Os09g08430 | Os09g0258600 | - | Detail |
| C2H9g09636 | 9:4,012,789-4,013,586 | + | C1H9g13981 | CX9g056739 | LOC_Os09g08270 | Os09g0256650 | - | Detail |
| C2H9g09579 | 9:4,019,003-4,019,404 | + | C1H9g01470 | CX9g056409 | LOC_Os09g08280 | Os09g0256700 | - | Detail |
| C2H9g20645 | 9:4,032,541-4,033,377 | + | C1H9g25599 | CX9g054871 | LOC_Os09g08270 | Os09g0256650 | - | Detail |
| C2H9g17919 | 9:4,041,031-4,042,164 | - | C1H9g05698 | CX9g055272 | LOC_Os09g08520 | Os09g0259500 | - | Detail |
| C2H9g19724 | 9:4,049,139-4,049,574 | - | - | CX9g057839 | - | - | - | Detail |
| C2H9g17398 | 9:4,068,954-4,069,589 | - | - | CX9g055049 | - | Os09g0259701 | - | Detail |
| C2H9g16397 | 9:4,069,742-4,070,820 | - | - | - | - | - | - | Detail |
| C2H9g09812 | 9:4,073,218-4,075,680 | + | C1H9g05698 | CX9g056751 | LOC_Os09g08550 | Os09g0260000 | - | Detail |
| C2H9g04777 | 9:4,077,501-4,078,607 | + | C1H9g05698 | CX9g054865 | LOC_Os09g08570 | Os09g0260200 | - | Detail |
| C2H9g09541 | 9:4,085,002-4,085,628 | + | C1H9g21104 | CX9g054865 | LOC_Os09g08580 | Os09g0260300 | - | Detail |
| C2H9g21698 | 9:4,085,686-4,086,090 | + | C1H9g21104 | CX9g054865 | LOC_Os09g08580 | Os09g0259500 | - | Detail |
| C2H9g20407 | 9:4,114,337-4,115,689 | - | C1H9g05698 | CX9g057100 | LOC_Os09g08620 | Os09g0261100 | - | Detail |
| C2H9g15136 | 9:4,124,823-4,134,638 | - | C1H9g30517 | CX9g056387 | LOC_Os09g08660 | Os09g0261300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003450 | 1:31,683,101-31,685,597 | - | C1H1g22933 | C2H1g11920 | LOC_Os01g61720 | Os01g0833800 | - | Detail |
| CX1g000146 | 1:31,702,631-31,706,357 | - | C1H1g12416 | C2H1g03973 | LOC_Os01g61760 | Os01g0834100 | - | Detail |
| CX1g002696 | 1:31,710,780-31,720,875 | + | C1H1g06212 | C2H1g25411 | LOC_Os01g61780 | Os01g0834200 | - | Detail |
| CX1g000392 | 1:31,728,832-31,730,226 | - | C1H1g30061 | C2H1g11057 | LOC_Os01g61810 | Os01g0834400 | HAP3A, OsHAP3A, OsNF-YB-2, NFYB2 | Detail |
| CX1g001710 | 1:31,732,062-31,736,839 | - | C1H1g07712 | C2H1g10042 | LOC_Os01g61814 | Os01g0834500 | - | Detail |
| CX1g001115 | 1:31,739,358-31,743,751 | + | C1H1g15578 | C2H1g11754 | LOC_Os01g61830 | Os01g0834700 | - | Detail |
| CX1g005583 | 1:31,747,037-31,747,480 | - | C1H1g28438 | C2H1g04024 | LOC_Os01g61840 | Os01g0834800 | - | Detail |
| CX1g004964 | 1:31,756,289-31,764,645 | - | C1H1g29053 | C2H1g07677 | LOC_Os01g61860 | Os01g0835000 | - | Detail |
| CX1g001158 | 1:31,780,325-31,785,704 | + | C1H1g14368 | C2H1g02343 | LOC_Os01g61880 | Os01g0835500 | - | Detail |
| CX1g006154 | 1:31,785,907-31,786,758 | - | - | - | LOC_Os01g61890 | Os01g0835600 | - | Detail |
| CX1g000977 | 1:31,796,656-31,797,857 | - | C1H1g23056 | C2H1g27745 | LOC_Os01g61900 | Os01g0835700 | OsCCT01 | Detail |
| CX1g007240 | 1:31,802,332-31,805,113 | - | C1H1g04133 | C2H1g21602 | LOC_Os01g61910 | Os01g0835800 | - | Detail |
| CX1g000993 | 1:31,814,934-31,823,726 | + | C1H1g12123 | C2H1g29300 | LOC_Os01g61930 | - | - | Detail |
| CX1g006864 | 1:31,827,353-31,827,517 | + | - | - | LOC_Os01g61335 | Os01g0829266 | - | Detail |
| CX1g006810 | 1:31,831,646-31,833,898 | + | C1H1g13267 | C2H1g05759 | LOC_Os01g61940 | Os01g0836600 | OsABCG3 | Detail |
| CX1g001966 | 1:31,841,843-31,843,138 | - | C1H1g15863 | C2H1g29885 | LOC_Os01g61960 | Os01g0836700 | - | Detail |
| CX1g004021 | 1:31,845,018-31,846,367 | - | C1H1g03833 | C2H1g29885 | LOC_Os01g61970 | Os01g0836800 | - | Detail |
| CX1g000026 | 1:31,855,549-31,856,643 | + | C1H1g23659 | - | LOC_Os01g61980 | Os01g0836900 | - | Detail |
| CX1g004745 | 1:31,859,515-31,862,619 | - | C1H1g22081 | C2H1g06537 | LOC_Os01g61990 | Os01g0837000 | - | Detail |
| CX1g000248 | 1:31,864,854-31,866,660 | + | C1H1g08351 | C2H1g25983 | LOC_Os01g62000 | Os01g0837100 | OsPLL2 | Detail |