| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g16855 | 4:18,676,712-18,677,694 | + | - | - | - | - | - | Detail |
| C1H4g18234 | 4:18,684,669-18,689,690 | + | C2H4g22168 | CX4g032398 | LOC_Os04g35380 | Os04g0433200 | - | Detail |
| C1H4g24371 | 4:18,697,153-18,697,812 | + | C2H4g19405 | CX4g032298 | LOC_Os04g35390 | Os04g0433300 | - | Detail |
| C1H4g19013 | 4:18,706,367-18,709,203 | + | C2H4g13084 | CX4g033941 | - | - | - | Detail |
| C1H4g13330 | 4:18,712,494-18,715,903 | + | C2H4g28789 | - | LOC_Os04g51490 | Os04g0132900 | - | Detail |
| C1H4g04051 | 4:18,723,790-18,728,035 | - | C2H4g19627 | CX4g033528 | LOC_Os04g35410 | Os04g0433600 | - | Detail |
| C1H4g09671 | 4:18,731,134-18,740,412 | - | C2H4g01376 | CX4g032013 | LOC_Os04g35420 | Os04g0433800 | OsRecQl4 | Detail |
| C1H4g26209 | 4:18,742,389-18,748,868 | - | C2H4g24266 | CX4g032480 | LOC_Os04g35430 | Os04g0433900 | - | Detail |
| C1H4g16755 | 4:18,759,922-18,763,703 | - | C2H4g14516 | CX4g036182 | LOC_Os04g35480 | Os04g0434300 | - | Detail |
| C1H4g01137 | 4:18,763,984-18,765,686 | + | C2H4g03670 | CX4g033477 | LOC_Os04g35490 | Os04g0434400 | - | Detail |
| C1H4g18837 | 4:18,780,963-18,792,103 | - | C2H4g12666 | CX4g033597 | LOC_Os04g35510 | Os04g0434600 | - | Detail |
| C1H4g16208 | 4:18,794,268-18,798,883 | - | C2H4g00913 | CX4g035656 | LOC_Os04g35520 | Os04g0434800 | OsAPX7, sAPX | Detail |
| C1H4g09329 | 4:18,802,216-18,803,580 | + | C2H4g20243 | CX4g035680 | LOC_Os04g35530 | Os04g0434900 | - | Detail |
| C1H4g19761 | 4:18,810,258-18,815,117 | + | C2H4g06857 | CX4g036436 | LOC_Os04g35540 | Os04g0435100 | - | Detail |
| C1H4g06341 | 4:18,826,650-18,826,940 | - | C2H2g20826 | CX11g013683 | - | - | - | Detail |
| C1H4g07963 | 4:18,832,271-18,832,572 | + | - | CX4g034999 | - | - | - | Detail |
| C1H4g18209 | 4:18,839,895-18,842,170 | - | C2H4g24818 | CX4g032696 | LOC_Os04g35560 | Os04g0435500 | - | Detail |
| C1H4g19177 | 4:18,854,300-18,859,728 | + | C2H4g14359 | CX4g035624 | LOC_Os04g35570 | Os04g0435700 | - | Detail |
| C1H4g12800 | 4:18,867,887-18,871,394 | - | C2H4g11818 | CX4g033235 | LOC_Os04g35590 | Os04g0436100 | OsACOT | Detail |
| C1H4g13941 | 4:18,873,267-18,875,907 | - | C2H4g10059 | CX4g035055 | LOC_Os04g35600 | Os04g0436300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003450 | 1:31,683,101-31,685,597 | - | C1H1g22933 | C2H1g11920 | LOC_Os01g61720 | Os01g0833800 | - | Detail |
| CX1g000146 | 1:31,702,631-31,706,357 | - | C1H1g12416 | C2H1g03973 | LOC_Os01g61760 | Os01g0834100 | - | Detail |
| CX1g002696 | 1:31,710,780-31,720,875 | + | C1H1g06212 | C2H1g25411 | LOC_Os01g61780 | Os01g0834200 | - | Detail |
| CX1g000392 | 1:31,728,832-31,730,226 | - | C1H1g30061 | C2H1g11057 | LOC_Os01g61810 | Os01g0834400 | HAP3A, OsHAP3A, OsNF-YB-2, NFYB2 | Detail |
| CX1g001710 | 1:31,732,062-31,736,839 | - | C1H1g07712 | C2H1g10042 | LOC_Os01g61814 | Os01g0834500 | - | Detail |
| CX1g001115 | 1:31,739,358-31,743,751 | + | C1H1g15578 | C2H1g11754 | LOC_Os01g61830 | Os01g0834700 | - | Detail |
| CX1g005583 | 1:31,747,037-31,747,480 | - | C1H1g28438 | C2H1g04024 | LOC_Os01g61840 | Os01g0834800 | - | Detail |
| CX1g004964 | 1:31,756,289-31,764,645 | - | C1H1g29053 | C2H1g07677 | LOC_Os01g61860 | Os01g0835000 | - | Detail |
| CX1g001158 | 1:31,780,325-31,785,704 | + | C1H1g14368 | C2H1g02343 | LOC_Os01g61880 | Os01g0835500 | - | Detail |
| CX1g006154 | 1:31,785,907-31,786,758 | - | - | - | LOC_Os01g61890 | Os01g0835600 | - | Detail |
| CX1g000977 | 1:31,796,656-31,797,857 | - | C1H1g23056 | C2H1g27745 | LOC_Os01g61900 | Os01g0835700 | OsCCT01 | Detail |
| CX1g007240 | 1:31,802,332-31,805,113 | - | C1H1g04133 | C2H1g21602 | LOC_Os01g61910 | Os01g0835800 | - | Detail |
| CX1g000993 | 1:31,814,934-31,823,726 | + | C1H1g12123 | C2H1g29300 | LOC_Os01g61930 | - | - | Detail |
| CX1g006864 | 1:31,827,353-31,827,517 | + | - | - | LOC_Os01g61335 | Os01g0829266 | - | Detail |
| CX1g006810 | 1:31,831,646-31,833,898 | + | C1H1g13267 | C2H1g05759 | LOC_Os01g61940 | Os01g0836600 | OsABCG3 | Detail |
| CX1g001966 | 1:31,841,843-31,843,138 | - | C1H1g15863 | C2H1g29885 | LOC_Os01g61960 | Os01g0836700 | - | Detail |
| CX1g004021 | 1:31,845,018-31,846,367 | - | C1H1g03833 | C2H1g29885 | LOC_Os01g61970 | Os01g0836800 | - | Detail |
| CX1g000026 | 1:31,855,549-31,856,643 | + | C1H1g23659 | - | LOC_Os01g61980 | Os01g0836900 | - | Detail |
| CX1g004745 | 1:31,859,515-31,862,619 | - | C1H1g22081 | C2H1g06537 | LOC_Os01g61990 | Os01g0837000 | - | Detail |
| CX1g000248 | 1:31,864,854-31,866,660 | + | C1H1g08351 | C2H1g25983 | LOC_Os01g62000 | Os01g0837100 | OsPLL2 | Detail |