| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g29686 | 9:12,283,800-12,285,841 | + | C1H9g14098 | CX9g057499 | - | Os09g0411500 | - | Detail |
| C2H9g24020 | 9:12,289,164-12,291,360 | - | C1H9g15710 | CX9g055887 | LOC_Os09g24530 | Os09g0411650 | - | Detail |
| C2H9g15723 | 9:12,292,714-12,294,723 | - | C1H9g26658 | - | LOC_Os09g24540 | Os09g0411700 | - | Detail |
| C2H9g30013 | 9:12,299,658-12,300,674 | - | C1H9g25817 | CX9g056422 | LOC_Os09g24560 | Os09g0411900 | - | Detail |
| C2H9g02677 | 9:12,305,642-12,309,499 | - | - | - | - | - | - | Detail |
| C2H9g16512 | 9:12,310,817-12,313,589 | - | - | CX9g056752 | - | - | - | Detail |
| C2H9g29693 | 9:12,320,549-12,323,729 | - | C1H9g04539 | CX9g055609 | LOC_Os09g24570 | Os09g0412200 | - | Detail |
| C2H9g24987 | 9:12,357,684-12,358,048 | - | C1H9g24887 | CX9g056335 | LOC_Os09g24590 | Os09g0412400 | - | Detail |
| C2H9g22954 | 9:12,367,829-12,369,247 | + | C1H9g25612 | CX9g056498 | LOC_Os09g24620 | Os09g0412700 | - | Detail |
| C2H9g30609 | 9:12,375,823-12,380,866 | + | C1H9g10917 | CX9g055582 | LOC_Os09g24650 | Os09g0413000 | - | Detail |
| C2H9g23813 | 9:12,381,752-12,384,982 | - | C1H9g25606 | CX9g054861 | LOC_Os09g24660 | Os09g0413100 | - | Detail |
| C2H9g23311 | 9:12,385,034-12,389,010 | + | C1H9g01483 | CX9g055611 | LOC_Os09g24670 | Os09g0413200 | - | Detail |
| C2H9g07064 | 9:12,392,032-12,394,467 | - | C1H9g27670 | CX9g055527 | LOC_Os09g24680 | Os09g0413300 | OsPPR1 | Detail |
| C2H9g21107 | 9:12,395,821-12,397,300 | - | C1H9g13850 | CX9g055730 | LOC_Os09g24690 | Os09g0413500 | - | Detail |
| C2H9g10108 | 9:12,398,905-12,403,516 | - | C1H9g31189 | CX9g055962 | LOC_Os09g24700 | Os09g0413600 | - | Detail |
| C2H9g16912 | 9:12,417,115-12,421,272 | + | C1H9g25839 | CX9g057257 | LOC_Os09g24710 | Os09g0413700 | - | Detail |
| C2H9g05872 | 9:12,444,326-12,444,674 | + | C1H9g16168 | CX9g055576 | LOC_Os09g24800 | Os09g0414300 | Os2R_MYB83 | Detail |
| C2H9g16040 | 9:12,444,717-12,445,469 | + | C1H9g16168 | CX9g055576 | LOC_Os09g24800 | Os09g0414300 | Os2R_MYB83 | Detail |
| C2H9g10070 | 9:12,500,678-12,501,849 | + | C1H9g29440 | CX9g057784 | LOC_Os09g24840 | Os09g0414900 | - | Detail |
| C2H9g21296 | 9:12,501,854-12,502,991 | - | C1H9g27618 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001275 | 1:31,558,445-31,559,020 | - | C1H1g19774 | C2H1g08171 | LOC_Os01g61470 | Os01g0830900 | - | Detail |
| CX1g002960 | 1:31,570,249-31,570,923 | + | C1H1g14773 | C2H1g07733 | LOC_Os01g61480 | Os01g0831000 | LAX1, lax, lax(lx), LAX1, lx, OsbHLH123 | Detail |
| CX1g003525 | 1:31,574,958-31,577,885 | + | C1H1g29926 | C2H1g10096 | LOC_Os01g61500 | Os01g0831200 | OsBAG4, EIP1 | Detail |
| CX1g003586 | 1:31,578,531-31,580,750 | - | C1H1g29563 | C2H1g19797 | LOC_Os01g61510 | Os01g0831300 | - | Detail |
| CX1g004163 | 1:31,583,546-31,585,240 | - | C1H1g16875 | C2H1g10064 | LOC_Os01g61550 | Os01g0831900 | - | Detail |
| CX1g006982 | 1:31,587,574-31,590,372 | - | C1H1g09267 | C2H1g01874 | LOC_Os01g61560 | Os01g0832000 | CDS5, OsCDS5 | Detail |
| CX1g004599 | 1:31,592,088-31,593,891 | + | C1H1g18254 | C2H1g04373 | LOC_Os01g61570 | Os01g0832100 | - | Detail |
| CX1g001311 | 1:31,596,164-31,599,484 | - | C1H1g00383 | C2H1g19266 | LOC_Os01g61580 | Os01g0832200 | - | Detail |
| CX1g004790 | 1:31,603,549-31,609,170 | + | C1H1g00574 | C2H1g14897 | LOC_Os01g61590 | Os01g0832300 | OsCPK3 | Detail |
| CX1g000601 | 1:31,624,769-31,629,009 | + | C1H1g31694 | C2H1g11131 | LOC_Os01g61610 | Os01g0832600 | - | Detail |
| CX1g006439 | 1:31,645,680-31,650,498 | + | C1H1g07002 | C2H1g22191 | LOC_Os01g61620 | Os01g0832900 | - | Detail |
| CX1g006609 | 1:31,651,243-31,653,240 | + | C1H1g10107 | C2H1g03571 | LOC_Os01g61630 | Os01g0833000 | - | Detail |
| CX1g003404 | 1:31,653,858-31,656,164 | - | C1H1g13635 | C2H1g17085 | LOC_Os01g61640 | Os01g0833100 | - | Detail |
| CX1g003333 | 1:31,661,149-31,664,246 | + | C1H1g07003 | C2H1g00983 | LOC_Os01g61670 | Os01g0833200 | - | Detail |
| CX1g005332 | 1:31,665,427-31,666,093 | + | C1H1g07552 | C2H1g24837 | LOC_Os01g61680 | Os01g0833400 | - | Detail |
| CX1g001176 | 1:31,667,096-31,669,907 | - | C1H1g26345 | C2H1g22767 | LOC_Os01g61690 | Os01g0833500 | - | Detail |
| CX1g006671 | 1:31,670,816-31,670,983 | - | - | - | - | Os01g0728000 | - | Detail |
| CX1g000140 | 1:31,671,816-31,672,789 | - | C1H1g02922 | C2H1g05497 | LOC_Os01g61700 | Os01g0833600 | - | Detail |
| CX1g003313 | 1:31,673,851-31,679,411 | - | C1H1g09497 | C2H1g26726 | LOC_Os01g61710 | Os01g0833700 | - | Detail |
| CX1g001620 | 1:31,678,033-31,678,635 | + | - | - | - | Os01g0833750 | - | Detail |