| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g06798 | 3:2,538,968-2,540,935 | - | C2H3g15451 | CX3g027324 | LOC_Os03g05740 | Os03g0151900 | - | Detail |
| C1H3g31058 | 3:2,548,029-2,549,770 | - | C2H3g30386 | CX3g030512 | LOC_Os03g05750 | Os03g0152000 | - | Detail |
| C1H3g20082 | 3:2,552,092-2,554,996 | + | C2H3g26526 | CX3g026911 | LOC_Os03g05760 | Os03g0152100 | - | Detail |
| C1H3g31474 | 3:2,561,972-2,563,538 | + | C2H3g15744 | CX3g029839 | LOC_Os03g05770 | Os03g0152300 | - | Detail |
| C1H3g20421 | 3:2,566,417-2,571,266 | - | C2H3g01485 | CX3g028932 | LOC_Os03g05780 | Os03g0152400 | - | Detail |
| C1H3g15708 | 3:2,580,682-2,583,231 | - | C2H3g04206 | CX3g025626 | LOC_Os03g05800 | Os03g0152600 | - | Detail |
| C1H3g24101 | 3:2,585,577-2,590,413 | + | C2H3g16126 | CX3g028763 | LOC_Os03g05806 | Os03g0152700 | TCD3, OsPUS1 | Detail |
| C1H3g07789 | 3:2,591,035-2,596,598 | + | C2H3g23725 | CX3g028004 | LOC_Os03g05812 | Os03g0152800 | - | Detail |
| C1H3g06558 | 3:2,597,882-2,606,640 | + | C2H3g05754 | CX3g031112 | LOC_Os03g05820 | Os03g0152900 | - | Detail |
| C1H3g08014 | 3:2,606,803-2,614,651 | - | C2H3g15298 | CX3g030862 | LOC_Os03g05830 | Os03g0153000 | - | Detail |
| C1H3g09831 | 3:2,616,961-2,617,373 | + | C2H3g18916 | - | LOC_Os03g05840 | Os03g0153100 | - | Detail |
| C1H3g11969 | 3:2,618,221-2,620,032 | + | C2H3g20486 | - | LOC_Os03g05880 | Os03g0153100 | - | Detail |
| C1H3g06494 | 3:2,628,053-2,629,267 | + | C2H3g30530 | - | LOC_Os03g05880 | Os03g0153500 | - | Detail |
| C1H3g10654 | 3:2,637,258-2,638,982 | + | C2H3g25228 | - | LOC_Os03g05900 | Os03g0153900 | - | Detail |
| C1H3g09326 | 3:2,640,113-2,641,966 | + | C2H3g12605 | - | LOC_Os03g05910 | Os03g0154000 | - | Detail |
| C1H3g00046 | 3:2,642,666-2,646,216 | + | C2H3g05179 | - | LOC_Os03g05920 | Os03g0154100 | - | Detail |
| C1H3g08889 | 3:2,646,671-2,647,198 | + | C2H3g05062 | CX11g014366 | LOC_Os03g05930 | Os11g0602400 | - | Detail |
| C1H3g17558 | 3:2,650,576-2,653,794 | + | C2H3g25344 | CX3g029639 | LOC_Os03g05980 | Os03g0154700 | - | Detail |
| C1H3g01440 | 3:2,657,467-2,659,068 | + | C2H3g05179 | - | LOC_Os03g05920 | Os03g0154100 | - | Detail |
| C1H3g23253 | 3:2,661,785-2,662,716 | + | C2H3g13676 | CX3g026862 | LOC_Os03g06000 | Os03g0155300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001275 | 1:31,558,445-31,559,020 | - | C1H1g19774 | C2H1g08171 | LOC_Os01g61470 | Os01g0830900 | - | Detail |
| CX1g002960 | 1:31,570,249-31,570,923 | + | C1H1g14773 | C2H1g07733 | LOC_Os01g61480 | Os01g0831000 | LAX1, lax, lax(lx), LAX1, lx, OsbHLH123 | Detail |
| CX1g003525 | 1:31,574,958-31,577,885 | + | C1H1g29926 | C2H1g10096 | LOC_Os01g61500 | Os01g0831200 | OsBAG4, EIP1 | Detail |
| CX1g003586 | 1:31,578,531-31,580,750 | - | C1H1g29563 | C2H1g19797 | LOC_Os01g61510 | Os01g0831300 | - | Detail |
| CX1g004163 | 1:31,583,546-31,585,240 | - | C1H1g16875 | C2H1g10064 | LOC_Os01g61550 | Os01g0831900 | - | Detail |
| CX1g006982 | 1:31,587,574-31,590,372 | - | C1H1g09267 | C2H1g01874 | LOC_Os01g61560 | Os01g0832000 | CDS5, OsCDS5 | Detail |
| CX1g004599 | 1:31,592,088-31,593,891 | + | C1H1g18254 | C2H1g04373 | LOC_Os01g61570 | Os01g0832100 | - | Detail |
| CX1g001311 | 1:31,596,164-31,599,484 | - | C1H1g00383 | C2H1g19266 | LOC_Os01g61580 | Os01g0832200 | - | Detail |
| CX1g004790 | 1:31,603,549-31,609,170 | + | C1H1g00574 | C2H1g14897 | LOC_Os01g61590 | Os01g0832300 | OsCPK3 | Detail |
| CX1g000601 | 1:31,624,769-31,629,009 | + | C1H1g31694 | C2H1g11131 | LOC_Os01g61610 | Os01g0832600 | - | Detail |
| CX1g006439 | 1:31,645,680-31,650,498 | + | C1H1g07002 | C2H1g22191 | LOC_Os01g61620 | Os01g0832900 | - | Detail |
| CX1g006609 | 1:31,651,243-31,653,240 | + | C1H1g10107 | C2H1g03571 | LOC_Os01g61630 | Os01g0833000 | - | Detail |
| CX1g003404 | 1:31,653,858-31,656,164 | - | C1H1g13635 | C2H1g17085 | LOC_Os01g61640 | Os01g0833100 | - | Detail |
| CX1g003333 | 1:31,661,149-31,664,246 | + | C1H1g07003 | C2H1g00983 | LOC_Os01g61670 | Os01g0833200 | - | Detail |
| CX1g005332 | 1:31,665,427-31,666,093 | + | C1H1g07552 | C2H1g24837 | LOC_Os01g61680 | Os01g0833400 | - | Detail |
| CX1g001176 | 1:31,667,096-31,669,907 | - | C1H1g26345 | C2H1g22767 | LOC_Os01g61690 | Os01g0833500 | - | Detail |
| CX1g006671 | 1:31,670,816-31,670,983 | - | - | - | - | Os01g0728000 | - | Detail |
| CX1g000140 | 1:31,671,816-31,672,789 | - | C1H1g02922 | C2H1g05497 | LOC_Os01g61700 | Os01g0833600 | - | Detail |
| CX1g003313 | 1:31,673,851-31,679,411 | - | C1H1g09497 | C2H1g26726 | LOC_Os01g61710 | Os01g0833700 | - | Detail |
| CX1g001620 | 1:31,678,033-31,678,635 | + | - | - | - | Os01g0833750 | - | Detail |