| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g23707 | 9:10,696,265-10,698,754 | + | C2H9g21285 | CX9g058046 | LOC_Os09g20970 | Os09g0376600 | - | Detail |
| C1H9g17391 | 9:10,702,865-10,704,025 | + | C2H9g14838 | CX9g056454 | LOC_Os09g20980 | Os09g0376700 | RRF1 | Detail |
| C1H9g30567 | 9:10,709,908-10,715,813 | - | C2H9g05383 | CX9g055601 | LOC_Os09g20990 | Os09g0376800 | - | Detail |
| C1H9g29995 | 9:10,729,246-10,733,876 | - | C2H9g05268 | CX9g056662 | LOC_Os09g21000 | Os09g0376900 | - | Detail |
| C1H9g21881 | 9:10,762,636-10,762,884 | - | C2H9g20413 | CX9g057809 | LOC_Os09g21090 | - | - | Detail |
| C1H9g20818 | 9:10,777,512-10,783,843 | + | C2H9g01045 | - | LOC_Os09g21100 | - | - | Detail |
| C1H9g31308 | 9:10,787,219-10,792,419 | - | C2H9g29285 | CX9g055569 | LOC_Os09g21110 | Os09g0378300 | - | Detail |
| C1H9g27440 | 9:10,795,300-10,795,599 | - | C2H9g17709 | - | - | - | - | Detail |
| C1H9g30448 | 9:10,805,398-10,807,542 | + | C2H9g02081 | CX9g057907 | LOC_Os09g21120 | Os09g0378700 | - | Detail |
| C1H9g04683 | 9:10,827,284-10,829,075 | - | C2H9g05334 | CX9g056901 | LOC_Os09g21170 | Os09g0379400 | - | Detail |
| C1H9g06561 | 9:10,829,444-10,830,535 | - | - | - | - | - | - | Detail |
| C1H9g09879 | 9:10,833,241-10,837,032 | + | C2H9g04315 | - | - | - | - | Detail |
| C1H9g16223 | 9:10,838,620-10,840,095 | - | C2H9g13405 | CX9g056457 | LOC_Os09g21170 | Os09g0379400 | - | Detail |
| C1H9g24346 | 9:10,847,517-10,848,324 | + | C2H9g08492 | CX9g056066 | - | - | - | Detail |
| C1H9g09756 | 9:10,864,470-10,866,689 | - | C2H9g24966 | CX9g056903 | LOC_Os09g21210 | Os09g0379900 | - | Detail |
| C1H9g03748 | 9:10,876,065-10,880,211 | + | C2H9g07796 | CX9g055882 | LOC_Os09g21230 | Os09g0380050 | - | Detail |
| C1H9g24623 | 9:10,887,558-10,889,785 | + | C2H9g21407 | CX9g055229 | LOC_Os09g21250 | Os09g0380200 | OsV<sub>5A</sub>, YLC1 | Detail |
| C1H9g30696 | 9:10,893,263-10,895,284 | + | C2H9g18507 | CX9g057063 | LOC_Os09g21260 | Os09g0380300 | - | Detail |
| C1H9g01526 | 9:10,920,744-10,921,790 | + | - | CX9g054965 | LOC_Os09g21290 | Os09g0380600 | - | Detail |
| C1H9g04772 | 9:10,936,627-10,941,052 | + | C2H9g07225 | CX9g055269 | LOC_Os09g21340 | Os09g0381100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001275 | 1:31,558,445-31,559,020 | - | C1H1g19774 | C2H1g08171 | LOC_Os01g61470 | Os01g0830900 | - | Detail |
| CX1g002960 | 1:31,570,249-31,570,923 | + | C1H1g14773 | C2H1g07733 | LOC_Os01g61480 | Os01g0831000 | LAX1, lax, lax(lx), LAX1, lx, OsbHLH123 | Detail |
| CX1g003525 | 1:31,574,958-31,577,885 | + | C1H1g29926 | C2H1g10096 | LOC_Os01g61500 | Os01g0831200 | OsBAG4, EIP1 | Detail |
| CX1g003586 | 1:31,578,531-31,580,750 | - | C1H1g29563 | C2H1g19797 | LOC_Os01g61510 | Os01g0831300 | - | Detail |
| CX1g004163 | 1:31,583,546-31,585,240 | - | C1H1g16875 | C2H1g10064 | LOC_Os01g61550 | Os01g0831900 | - | Detail |
| CX1g006982 | 1:31,587,574-31,590,372 | - | C1H1g09267 | C2H1g01874 | LOC_Os01g61560 | Os01g0832000 | CDS5, OsCDS5 | Detail |
| CX1g004599 | 1:31,592,088-31,593,891 | + | C1H1g18254 | C2H1g04373 | LOC_Os01g61570 | Os01g0832100 | - | Detail |
| CX1g001311 | 1:31,596,164-31,599,484 | - | C1H1g00383 | C2H1g19266 | LOC_Os01g61580 | Os01g0832200 | - | Detail |
| CX1g004790 | 1:31,603,549-31,609,170 | + | C1H1g00574 | C2H1g14897 | LOC_Os01g61590 | Os01g0832300 | OsCPK3 | Detail |
| CX1g000601 | 1:31,624,769-31,629,009 | + | C1H1g31694 | C2H1g11131 | LOC_Os01g61610 | Os01g0832600 | - | Detail |
| CX1g006439 | 1:31,645,680-31,650,498 | + | C1H1g07002 | C2H1g22191 | LOC_Os01g61620 | Os01g0832900 | - | Detail |
| CX1g006609 | 1:31,651,243-31,653,240 | + | C1H1g10107 | C2H1g03571 | LOC_Os01g61630 | Os01g0833000 | - | Detail |
| CX1g003404 | 1:31,653,858-31,656,164 | - | C1H1g13635 | C2H1g17085 | LOC_Os01g61640 | Os01g0833100 | - | Detail |
| CX1g003333 | 1:31,661,149-31,664,246 | + | C1H1g07003 | C2H1g00983 | LOC_Os01g61670 | Os01g0833200 | - | Detail |
| CX1g005332 | 1:31,665,427-31,666,093 | + | C1H1g07552 | C2H1g24837 | LOC_Os01g61680 | Os01g0833400 | - | Detail |
| CX1g001176 | 1:31,667,096-31,669,907 | - | C1H1g26345 | C2H1g22767 | LOC_Os01g61690 | Os01g0833500 | - | Detail |
| CX1g006671 | 1:31,670,816-31,670,983 | - | - | - | - | Os01g0728000 | - | Detail |
| CX1g000140 | 1:31,671,816-31,672,789 | - | C1H1g02922 | C2H1g05497 | LOC_Os01g61700 | Os01g0833600 | - | Detail |
| CX1g003313 | 1:31,673,851-31,679,411 | - | C1H1g09497 | C2H1g26726 | LOC_Os01g61710 | Os01g0833700 | - | Detail |
| CX1g001620 | 1:31,678,033-31,678,635 | + | - | - | - | Os01g0833750 | - | Detail |