| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g21635 | 5:1,800,625-1,801,726 | + | C2H5g10317 | CX5g038822 | LOC_Os05g04470 | Os05g0135200 | - | Detail |
| C1H5g11348 | 5:1,806,814-1,808,174 | + | C2H5g12500 | CX5g038822 | LOC_Os05g04490 | Os05g0135400 | OsPRX70 | Detail |
| C1H5g11788 | 5:1,813,487-1,815,667 | + | C2H5g16100 | CX5g038822 | LOC_Os05g04500 | Os05g0135500 | - | Detail |
| C1H5g05411 | 5:1,823,550-1,824,740 | + | C2H1g10329 | CX5g039963 | LOC_Os05g04510 | Os05g0135700 | - | Detail |
| C1H5g15318 | 5:1,829,349-1,833,577 | + | C2H5g15340 | CX5g039240 | LOC_Os05g04520 | Os05g0135800 | RLCK178, OsPti1a, OsRLCK178 | Detail |
| C1H5g22825 | 5:1,834,109-1,836,299 | - | C2H5g09071 | CX5g040556 | LOC_Os05g04530 | Os05g0135900 | - | Detail |
| C1H5g04500 | 5:1,841,006-1,842,757 | + | C2H5g21536 | - | - | - | - | Detail |
| C1H5g10755 | 5:1,855,741-1,859,524 | - | C2H5g01548 | CX5g039210 | LOC_Os05g04550 | Os05g0136200 | - | Detail |
| C1H5g22395 | 5:1,864,782-1,869,273 | + | - | - | - | Os05g0136400 | - | Detail |
| C1H5g30580 | 5:1,888,889-1,895,075 | + | C2H5g23155 | CX5g040521 | LOC_Os05g04584 | Os05g0136900 | OsPMT2, OsAT3 | Detail |
| C1H5g18480 | 5:1,908,700-1,914,968 | + | C2H5g06046 | CX5g040420 | LOC_Os05g04610 | Os05g0137200 | - | Detail |
| C1H5g19392 | 5:1,915,781-1,917,452 | + | C2H5g14079 | CX5g039843 | LOC_Os05g04620 | Os05g0137300 | - | Detail |
| C1H5g26357 | 5:1,918,487-1,922,420 | + | C2H5g14963 | CX5g040603 | LOC_Os05g04630 | Os05g0137400 | - | Detail |
| C1H5g12317 | 5:1,922,878-1,928,299 | - | C2H5g23559 | CX5g036724 | LOC_Os05g04640 | Os05g0137500 | OsWRKY5 | Detail |
| C1H5g04306 | 5:1,939,992-1,941,266 | + | C2H5g03222 | CX5g037574 | LOC_Os05g04650 | Os05g0137600 | - | Detail |
| C1H5g13155 | 5:1,941,560-1,943,068 | - | C2H5g28363 | - | LOC_Os05g04660 | Os05g0137700 | - | Detail |
| C1H5g04433 | 5:1,960,400-1,960,992 | - | C2H5g07352 | CX1g002314 | LOC_Os05g04700 | Os05g0138300 | OsLti6b | Detail |
| C1H5g25088 | 5:1,984,002-1,985,777 | + | C2H5g19962 | CX5g037589 | LOC_Os05g04740 | Os05g0139100 | APG | Detail |
| C1H5g25511 | 5:1,988,776-1,989,975 | - | C2H5g25266 | CX5g037123 | LOC_Os05g04750 | Os05g0139200 | - | Detail |
| C1H5g18751 | 5:1,997,995-1,999,179 | - | C2H5g23665 | CX5g037123 | LOC_Os05g04770 | Os05g0139300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003318 | 1:31,115,695-31,119,595 | + | C1H1g15119 | C2H1g06505 | LOC_Os01g60490 | Os01g0820400 | OsWRKY22, WRKY22 | Detail |
| CX1g005345 | 1:31,130,737-31,137,105 | + | C1H1g29843 | C2H1g27136 | LOC_Os01g60520 | Os01g0820700 | - | Detail |
| CX1g002391 | 1:31,145,696-31,146,648 | - | - | C2H3g10678 | - | - | - | Detail |
| CX1g000164 | 1:31,149,494-31,151,884 | - | C1H1g16541 | C2H1g23568 | LOC_Os01g60600 | Os01g0821300 | OsWRKY108 | Detail |
| CX1g007027 | 1:31,164,695-31,165,720 | + | C1H1g30388 | C2H1g21075 | LOC_Os01g60640 | Os01g0821600 | OsWRKY21 | Detail |
| CX1g000406 | 1:31,166,867-31,169,729 | - | C1H1g25043 | C2H1g25538 | LOC_Os01g60650 | Os01g0821700 | - | Detail |
| CX1g005983 | 1:31,171,187-31,176,106 | - | C1H1g31255 | C2H1g28094 | LOC_Os01g60660 | Os01g0821800 | - | Detail |
| CX1g006557 | 1:31,181,116-31,184,432 | - | C1H1g11845 | C2H1g18116 | LOC_Os01g60670 | Os01g0821900 | - | Detail |
| CX1g000167 | 1:31,193,384-31,193,896 | + | C1H1g18880 | - | LOC_Os01g60690 | - | - | Detail |
| CX1g001048 | 1:31,195,403-31,198,253 | - | C1H1g15412 | C2H1g14856 | LOC_Os01g60700 | Os01g0822200 | - | Detail |
| CX1g004646 | 1:31,219,922-31,220,779 | + | - | - | - | - | - | Detail |
| CX1g000376 | 1:31,230,800-31,231,168 | - | C1H1g07733 | C2H5g15346 | LOC_Os01g60740 | Os01g0822900 | - | Detail |
| CX1g003897 | 1:31,242,506-31,243,737 | + | C1H1g31069 | C2H1g28179 | LOC_Os01g60770 | Os01g0823100 | - | Detail |
| CX1g001859 | 1:31,250,659-31,251,333 | + | C1H1g09909 | C2H1g01001 | LOC_Os01g60790 | Os01g0823300 | - | Detail |
| CX1g000409 | 1:31,253,246-31,255,592 | + | C1H1g09299 | C2H1g22329 | LOC_Os01g60800 | Os01g0823400 | - | Detail |
| CX1g003073 | 1:31,266,128-31,267,270 | - | C1H1g21052 | C2H5g25197 | LOC_Os01g60810 | Os01g0823500 | OsOFP6 | Detail |
| CX1g000050 | 1:31,274,696-31,275,503 | + | C1H1g15235 | C2H1g28368 | LOC_Os01g60830 | Os01g0823600 | - | Detail |
| CX1g001515 | 1:31,275,885-31,277,198 | - | C1H1g00815 | C2H1g25336 | LOC_Os01g60850 | Os01g0823700 | - | Detail |
| CX1g004254 | 1:31,286,479-31,288,521 | - | C1H1g24767 | C2H1g26804 | LOC_Os01g60860 | Os01g0823900 | OsPUB3 | Detail |
| CX1g005601 | 1:31,291,449-31,291,739 | + | - | - | - | - | - | Detail |