| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g07936 | 4:3,845,979-3,846,753 | - | C2H4g19699 | CX4g031672 | LOC_Os04g09720 | Os04g0176400 | - | Detail |
| C1H4g00886 | 4:3,858,267-3,862,987 | - | C2H4g19699 | CX4g031672 | LOC_Os04g09720 | Os04g0176400 | - | Detail |
| C1H4g30482 | 4:3,907,013-3,911,500 | - | C2H4g02357 | CX4g036574 | LOC_Os04g09770 | Os04g0177000 | - | Detail |
| C1H4g18497 | 4:3,913,645-3,914,572 | - | C2H4g05769 | - | LOC_Os04g09780 | Os04g0177100 | - | Detail |
| C1H4g30399 | 4:3,921,327-3,927,118 | - | C2H4g27475 | CX4g034078 | LOC_Os04g09800 | Os04g0177300 | OsCHR735, CHR735 | Detail |
| C1H4g22479 | 4:3,929,816-3,931,810 | - | C2H4g20561 | CX4g034820 | LOC_Os04g09810 | Os04g0177400 | - | Detail |
| C1H4g23867 | 4:3,937,603-3,937,944 | + | - | CX4g036109 | - | Os04g0177500 | - | Detail |
| C1H4g19750 | 4:3,939,617-3,953,493 | - | C2H4g20320 | CX4g036116 | - | Os04g0177600 | - | Detail |
| C1H4g12052 | 4:3,967,466-3,968,321 | + | C2H4g26728 | CX4g032774 | LOC_Os04g09900 | Os04g0179700 | OsKS4, OsKSL4, OsDTS2, OsKSL1 | Detail |
| C1H4g09839 | 4:3,968,659-3,973,655 | + | C2H4g23853 | CX4g032774 | LOC_Os04g09900 | Os04g0178300 | OsCPS4, Os-CPS4, OsCyc1, OsCPSsyn | Detail |
| C1H4g28574 | 4:3,984,451-3,986,302 | - | C2H4g09237 | CX4g036126 | LOC_Os04g09920 | Os04g0178400 | CYP99A3 | Detail |
| C1H4g09507 | 4:4,009,887-4,010,539 | - | - | CX4g036382 | - | - | - | Detail |
| C1H4g30336 | 4:4,027,038-4,027,982 | - | C2H4g09020 | CX4g033846 | LOC_Os04g10000 | Os04g0179100 | - | Detail |
| C1H4g01524 | 4:4,033,530-4,034,485 | - | C2H4g10076 | CX4g035289 | LOC_Os04g10010 | Os04g0179200 | - | Detail |
| C1H4g08248 | 4:4,076,377-4,081,777 | - | C2H4g06763 | CX4g034737 | LOC_Os04g10060 | Os04g0179700 | OsKS4, OsKSL4, OsDTS2, OsKSL1 | Detail |
| C1H4g04065 | 4:4,105,075-4,106,760 | + | C2H4g06078 | CX4g034919 | LOC_Os04g10160 | Os04g0180400 | - | Detail |
| C1H4g03949 | 4:4,166,936-4,169,530 | - | C2H4g21850 | CX4g035733 | LOC_Os04g10210 | Os04g0221000 | - | Detail |
| C1H4g10325 | 4:4,175,560-4,178,590 | - | C2H4g14385 | CX4g036149 | LOC_Os04g10240 | Os04g0181100 | - | Detail |
| C1H4g30056 | 4:4,184,444-4,189,768 | - | C2H4g14846 | CX4g035099 | LOC_Os04g10260 | Os04g0181300 | - | Detail |
| C1H4g22965 | 4:4,192,377-4,193,801 | + | C2H4g02690 | CX4g035182 | LOC_Os04g10350 | Os04g0181901 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003318 | 1:31,115,695-31,119,595 | + | C1H1g15119 | C2H1g06505 | LOC_Os01g60490 | Os01g0820400 | OsWRKY22, WRKY22 | Detail |
| CX1g005345 | 1:31,130,737-31,137,105 | + | C1H1g29843 | C2H1g27136 | LOC_Os01g60520 | Os01g0820700 | - | Detail |
| CX1g002391 | 1:31,145,696-31,146,648 | - | - | C2H3g10678 | - | - | - | Detail |
| CX1g000164 | 1:31,149,494-31,151,884 | - | C1H1g16541 | C2H1g23568 | LOC_Os01g60600 | Os01g0821300 | OsWRKY108 | Detail |
| CX1g007027 | 1:31,164,695-31,165,720 | + | C1H1g30388 | C2H1g21075 | LOC_Os01g60640 | Os01g0821600 | OsWRKY21 | Detail |
| CX1g000406 | 1:31,166,867-31,169,729 | - | C1H1g25043 | C2H1g25538 | LOC_Os01g60650 | Os01g0821700 | - | Detail |
| CX1g005983 | 1:31,171,187-31,176,106 | - | C1H1g31255 | C2H1g28094 | LOC_Os01g60660 | Os01g0821800 | - | Detail |
| CX1g006557 | 1:31,181,116-31,184,432 | - | C1H1g11845 | C2H1g18116 | LOC_Os01g60670 | Os01g0821900 | - | Detail |
| CX1g000167 | 1:31,193,384-31,193,896 | + | C1H1g18880 | - | LOC_Os01g60690 | - | - | Detail |
| CX1g001048 | 1:31,195,403-31,198,253 | - | C1H1g15412 | C2H1g14856 | LOC_Os01g60700 | Os01g0822200 | - | Detail |
| CX1g004646 | 1:31,219,922-31,220,779 | + | - | - | - | - | - | Detail |
| CX1g000376 | 1:31,230,800-31,231,168 | - | C1H1g07733 | C2H5g15346 | LOC_Os01g60740 | Os01g0822900 | - | Detail |
| CX1g003897 | 1:31,242,506-31,243,737 | + | C1H1g31069 | C2H1g28179 | LOC_Os01g60770 | Os01g0823100 | - | Detail |
| CX1g001859 | 1:31,250,659-31,251,333 | + | C1H1g09909 | C2H1g01001 | LOC_Os01g60790 | Os01g0823300 | - | Detail |
| CX1g000409 | 1:31,253,246-31,255,592 | + | C1H1g09299 | C2H1g22329 | LOC_Os01g60800 | Os01g0823400 | - | Detail |
| CX1g003073 | 1:31,266,128-31,267,270 | - | C1H1g21052 | C2H5g25197 | LOC_Os01g60810 | Os01g0823500 | OsOFP6 | Detail |
| CX1g000050 | 1:31,274,696-31,275,503 | + | C1H1g15235 | C2H1g28368 | LOC_Os01g60830 | Os01g0823600 | - | Detail |
| CX1g001515 | 1:31,275,885-31,277,198 | - | C1H1g00815 | C2H1g25336 | LOC_Os01g60850 | Os01g0823700 | - | Detail |
| CX1g004254 | 1:31,286,479-31,288,521 | - | C1H1g24767 | C2H1g26804 | LOC_Os01g60860 | Os01g0823900 | OsPUB3 | Detail |
| CX1g005601 | 1:31,291,449-31,291,739 | + | - | - | - | - | - | Detail |