| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g19852 | 1:27,939,465-27,941,499 | - | C2H1g24369 | CX1g001202 | - | Os01g0748100 | - | Detail |
| C1H1g12110 | 1:27,942,290-27,943,113 | - | C2H1g28384 | CX1g001852 | LOC_Os01g54430 | Os01g0748150 | - | Detail |
| C1H1g06433 | 1:27,948,211-27,948,642 | - | C2H1g16377 | CX1g005907 | LOC_Os01g54450 | Os01g0748300 | - | Detail |
| C1H1g03873 | 1:27,948,741-27,950,840 | + | C2H1g07802 | - | - | - | - | Detail |
| C1H1g15001 | 1:27,952,506-27,953,451 | - | C2H1g01977 | - | LOC_Os01g54460 | - | - | Detail |
| C1H1g03729 | 1:27,957,384-27,958,925 | + | C2H1g03618 | CX1g003919 | LOC_Os01g54470 | Os01g0748500 | - | Detail |
| C1H1g31289 | 1:27,959,205-27,962,965 | - | C2H1g11065 | CX1g002998 | LOC_Os01g54480 | Os01g0748600 | - | Detail |
| C1H1g13303 | 1:27,969,333-27,971,498 | + | C2H1g14520 | CX1g004481 | LOC_Os01g54490 | Os01g0748800 | - | Detail |
| C1H1g07195 | 1:27,976,833-27,977,195 | + | C2H1g25503 | CX1g002648 | - | - | - | Detail |
| C1H1g04026 | 1:27,977,529-27,981,091 | + | C2H1g05314 | CX1g006043 | LOC_Os01g54510 | Os01g0748900 | - | Detail |
| C1H1g06199 | 1:27,984,884-27,986,890 | + | C2H1g08416 | CX1g005528 | LOC_Os01g54515 | Os01g0748950 | OsNPF4.5 | Detail |
| C1H1g21519 | 1:27,987,165-27,988,265 | + | C2H1g22814 | CX1g000885 | LOC_Os01g54520 | Os01g0749000 | - | Detail |
| C1H1g06931 | 1:27,989,241-27,991,698 | + | C2H1g20660 | CX1g004193 | LOC_Os01g54530 | Os01g0749100 | - | Detail |
| C1H1g02075 | 1:27,992,483-27,994,856 | + | C2H1g21635 | CX1g000277 | LOC_Os01g54540 | Os01g0749200 | WLP1, cp rpl13, cp RPL13 | Detail |
| C1H1g00896 | 1:27,995,734-27,997,984 | + | C2H1g02265 | CX1g005465 | LOC_Os01g54550 | Os01g0749300 | HSFA4A, OsHsfA4a, OsHsfA4b, OsHsf-04, HSFA4B, HSF04, OsHSF9, RHSF9, HSF9 | Detail |
| C1H1g09179 | 1:27,998,928-28,003,010 | - | C2H1g14114 | CX1g003457 | LOC_Os01g54560 | Os01g0749400 | - | Detail |
| C1H1g19262 | 1:28,019,377-28,024,544 | + | C2H1g10922 | CX1g003630 | LOC_Os01g54580 | Os01g0749900 | - | Detail |
| C1H1g17809 | 1:28,028,092-28,031,780 | + | C2H1g29233 | CX1g000465 | LOC_Os01g54590 | Os01g0750000 | - | Detail |
| C1H1g24495 | 1:28,034,434-28,036,116 | - | C2H1g09211 | CX1g004996 | LOC_Os01g54600 | Os01g0750100 | WRKY13, OsWRKY13 | Detail |
| C1H1g00277 | 1:28,045,281-28,050,980 | + | C2H1g25863 | CX1g006527 | LOC_Os01g54620 | Os01g0750300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003318 | 1:31,115,695-31,119,595 | + | C1H1g15119 | C2H1g06505 | LOC_Os01g60490 | Os01g0820400 | OsWRKY22, WRKY22 | Detail |
| CX1g005345 | 1:31,130,737-31,137,105 | + | C1H1g29843 | C2H1g27136 | LOC_Os01g60520 | Os01g0820700 | - | Detail |
| CX1g002391 | 1:31,145,696-31,146,648 | - | - | C2H3g10678 | - | - | - | Detail |
| CX1g000164 | 1:31,149,494-31,151,884 | - | C1H1g16541 | C2H1g23568 | LOC_Os01g60600 | Os01g0821300 | OsWRKY108 | Detail |
| CX1g007027 | 1:31,164,695-31,165,720 | + | C1H1g30388 | C2H1g21075 | LOC_Os01g60640 | Os01g0821600 | OsWRKY21 | Detail |
| CX1g000406 | 1:31,166,867-31,169,729 | - | C1H1g25043 | C2H1g25538 | LOC_Os01g60650 | Os01g0821700 | - | Detail |
| CX1g005983 | 1:31,171,187-31,176,106 | - | C1H1g31255 | C2H1g28094 | LOC_Os01g60660 | Os01g0821800 | - | Detail |
| CX1g006557 | 1:31,181,116-31,184,432 | - | C1H1g11845 | C2H1g18116 | LOC_Os01g60670 | Os01g0821900 | - | Detail |
| CX1g000167 | 1:31,193,384-31,193,896 | + | C1H1g18880 | - | LOC_Os01g60690 | - | - | Detail |
| CX1g001048 | 1:31,195,403-31,198,253 | - | C1H1g15412 | C2H1g14856 | LOC_Os01g60700 | Os01g0822200 | - | Detail |
| CX1g004646 | 1:31,219,922-31,220,779 | + | - | - | - | - | - | Detail |
| CX1g000376 | 1:31,230,800-31,231,168 | - | C1H1g07733 | C2H5g15346 | LOC_Os01g60740 | Os01g0822900 | - | Detail |
| CX1g003897 | 1:31,242,506-31,243,737 | + | C1H1g31069 | C2H1g28179 | LOC_Os01g60770 | Os01g0823100 | - | Detail |
| CX1g001859 | 1:31,250,659-31,251,333 | + | C1H1g09909 | C2H1g01001 | LOC_Os01g60790 | Os01g0823300 | - | Detail |
| CX1g000409 | 1:31,253,246-31,255,592 | + | C1H1g09299 | C2H1g22329 | LOC_Os01g60800 | Os01g0823400 | - | Detail |
| CX1g003073 | 1:31,266,128-31,267,270 | - | C1H1g21052 | C2H5g25197 | LOC_Os01g60810 | Os01g0823500 | OsOFP6 | Detail |
| CX1g000050 | 1:31,274,696-31,275,503 | + | C1H1g15235 | C2H1g28368 | LOC_Os01g60830 | Os01g0823600 | - | Detail |
| CX1g001515 | 1:31,275,885-31,277,198 | - | C1H1g00815 | C2H1g25336 | LOC_Os01g60850 | Os01g0823700 | - | Detail |
| CX1g004254 | 1:31,286,479-31,288,521 | - | C1H1g24767 | C2H1g26804 | LOC_Os01g60860 | Os01g0823900 | OsPUB3 | Detail |
| CX1g005601 | 1:31,291,449-31,291,739 | + | - | - | - | - | - | Detail |