| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g25868 | 4:27,028,064-27,031,267 | + | C2H4g14538 | CX4g032554 | LOC_Os04g52320 | Os04g0613200 | - | Detail |
| C1H4g13224 | 4:27,033,552-27,036,319 | - | C2H4g16426 | CX4g033530 | LOC_Os04g52330 | Os04g0613300 | - | Detail |
| C1H4g01801 | 4:27,037,337-27,041,771 | - | C2H4g12813 | CX4g033988 | LOC_Os04g52340 | Os04g0613400 | - | Detail |
| C1H4g11906 | 4:27,042,573-27,044,494 | + | C2H4g02435 | CX4g031886 | LOC_Os04g52361 | Os04g0613500 | - | Detail |
| C1H4g23783 | 4:27,045,459-27,047,091 | + | C2H4g02435 | CX4g035778 | LOC_Os04g52361 | Os04g0613600 | - | Detail |
| C1H4g03528 | 4:27,048,147-27,052,611 | - | C2H4g14262 | CX4g033920 | LOC_Os04g52370 | Os04g0613700 | UAP2 | Detail |
| C1H4g12683 | 4:27,058,517-27,064,454 | - | C2H4g30596 | CX4g033615 | LOC_Os04g52380 | Os04g0613800 | - | Detail |
| C1H4g15444 | 4:27,067,771-27,072,901 | - | C2H4g10814 | CX4g032046 | LOC_Os04g52390 | Os04g0613900 | - | Detail |
| C1H4g09621 | 4:27,078,784-27,081,225 | + | C2H4g02940 | CX4g033364 | LOC_Os04g52400 | Os04g0614000 | - | Detail |
| C1H4g18002 | 4:27,082,871-27,084,273 | + | C2H4g14823 | CX4g033138 | LOC_Os04g52410 | Os04g0614100 | - | Detail |
| C1H4g00068 | 4:27,086,714-27,090,608 | + | C2H4g28997 | CX4g031526 | LOC_Os04g52420 | Os04g0616900 | - | Detail |
| C1H4g05036 | 4:27,094,625-27,096,302 | + | C2H4g06699 | CX4g031526 | LOC_Os04g52660 | Os04g0614300 | - | Detail |
| C1H4g02712 | 4:27,100,763-27,106,548 | + | C2H4g17218 | CX4g035904 | LOC_Os04g52450 | Os04g0614600 | - | Detail |
| C1H4g17515 | 4:27,111,400-27,120,369 | + | C2H4g10708 | CX4g035957 | LOC_Os04g52460 | Os04g0614700 | - | Detail |
| C1H4g07167 | 4:27,132,062-27,132,244 | + | - | - | - | - | - | Detail |
| C1H4g20369 | 4:27,132,485-27,137,405 | + | C2H4g23243 | CX4g036351 | LOC_Os04g52479 | Os04g0615000 | NAL1, nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4 | Detail |
| C1H4g29702 | 4:27,138,169-27,142,624 | + | C2H4g24013 | CX4g034949 | LOC_Os04g52500 | Os04g0615100 | - | Detail |
| C1H4g06180 | 4:27,143,216-27,143,900 | - | C2H4g04550 | - | LOC_Os04g52504 | Os04g0615200 | - | Detail |
| C1H4g16195 | 4:27,146,332-27,149,911 | + | C2H4g11553 | CX4g031653 | LOC_Os04g52520 | Os04g0615500 | - | Detail |
| C1H4g22078 | 4:27,150,667-27,151,792 | + | C2H4g12331 | CX4g031949 | LOC_Os04g52530 | Os04g0615600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g056022 | 9:19,737,158-19,739,633 | + | C1H9g16090 | C2H9g00653 | LOC_Os09g39400 | Os09g0567400 | - | Detail |
| CX9g057497 | 9:19,743,837-19,749,067 | + | C1H9g25909 | C2H9g10548 | LOC_Os09g39410 | Os09g0567500 | - | Detail |
| CX9g055257 | 9:19,750,856-19,755,178 | + | C1H9g01897 | C2H9g15634 | LOC_Os09g39420 | Os09g0567700 | - | Detail |
| CX9g058075 | 9:19,755,815-19,758,841 | - | C1H9g27590 | C2H9g07527 | LOC_Os09g39430 | Os09g0567800 | - | Detail |
| CX9g058045 | 9:19,762,746-19,765,034 | - | C1H9g04610 | C2H9g28844 | LOC_Os09g39440 | Os09g0567900 | - | Detail |
| CX9g055030 | 9:19,767,728-19,770,735 | + | C1H9g06631 | C2H9g14034 | LOC_Os09g39462 | Os09g0568000 | - | Detail |
| CX9g058185 | 9:19,772,294-19,772,518 | + | C1H9g15019 | - | - | - | - | Detail |
| CX9g055723 | 9:19,773,033-19,774,428 | + | C1H9g18800 | C2H9g07303 | LOC_Os09g39474 | Os09g0568100 | - | Detail |
| CX9g055477 | 9:19,775,252-19,776,536 | - | C1H9g25533 | C2H9g14146 | LOC_Os09g39490 | Os09g0568200 | - | Detail |
| CX9g056373 | 9:19,780,063-19,780,788 | - | C1H9g00933 | - | LOC_Os09g39510 | Os09g0568500 | - | Detail |
| CX9g056956 | 9:19,783,893-19,784,534 | - | C1H9g05388 | - | LOC_Os09g39520 | Os09g0568600 | - | Detail |
| CX9g057185 | 9:19,786,322-19,786,966 | - | C1H9g08565 | - | LOC_Os09g39530 | Os09g0568700 | - | Detail |
| CX9g057377 | 9:19,788,066-19,789,371 | - | C1H9g27100 | C2H9g28333 | LOC_Os09g39540 | Os09g0568800 | - | Detail |
| CX9g055404 | 9:19,789,815-19,791,712 | + | C1H9g30656 | C2H9g03364 | LOC_Os09g39550 | Os09g0568900 | IF1-2, IF<sub>1</sub>-2 | Detail |
| CX9g057720 | 9:19,794,408-19,795,181 | + | C1H9g22287 | C2H9g03868 | LOC_Os09g39560 | Os09g0569100 | - | Detail |
| CX9g057873 | 9:19,798,853-19,803,073 | + | C1H9g23985 | C2H9g00291 | LOC_Os09g39570 | Os09g0569200 | - | Detail |
| CX9g056948 | 9:19,803,978-19,806,775 | - | C1H9g21337 | C2H9g21708 | LOC_Os09g39580 | Os09g0569300 | - | Detail |
| CX9g054868 | 9:19,807,761-19,814,500 | - | C1H9g00926 | C2H9g03901 | LOC_Os09g39590 | Os09g0569400 | - | Detail |
| CX9g055933 | 9:19,814,799-19,815,846 | + | C1H9g13772 | C2H9g04048 | LOC_Os09g39594 | Os09g0569450 | - | Detail |
| CX9g055966 | 9:19,823,755-19,828,510 | + | C1H9g28953 | C2H9g14401 | LOC_Os09g39620 | Os09g0569800 | - | Detail |