| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g11455 | 3:5,667,589-5,676,280 | - | C2H3g25606 | CX3g031100 | LOC_Os03g12160 | Os03g0221800 | - | Detail |
| C1H3g05328 | 3:5,679,033-5,682,233 | - | C2H3g28200 | CX3g028642 | LOC_Os03g12180 | Os03g0222100 | - | Detail |
| C1H3g22084 | 3:5,683,225-5,684,571 | - | - | CX1g001382 | - | - | - | Detail |
| C1H3g10920 | 3:5,689,450-5,690,709 | + | C2H3g21744 | CX3g029448 | LOC_Os03g12210 | Os03g0222500 | - | Detail |
| C1H3g07232 | 3:5,698,966-5,701,249 | + | C2H3g09344 | CX3g031317 | LOC_Os03g12230 | Os03g0222600 | - | Detail |
| C1H3g04972 | 3:5,702,621-5,707,780 | + | C2H3g04698 | CX3g028958 | LOC_Os03g12236 | Os03g0222800 | - | Detail |
| C1H3g26972 | 3:5,709,181-5,711,242 | + | C2H3g19892 | CX3g027447 | LOC_Os03g12238 | - | - | Detail |
| C1H3g14957 | 3:5,715,416-5,719,293 | + | C2H3g10667 | CX3g031278 | LOC_Os03g12250 | Os03g0223000 | - | Detail |
| C1H3g14297 | 3:5,724,282-5,725,868 | - | C2H3g29015 | CX3g030840 | LOC_Os03g12260 | Os03g0223100 | CYP94D15, OsCYP94D15 | Detail |
| C1H3g13087 | 3:5,730,852-5,733,610 | + | C2H3g13113 | CX3g029663 | LOC_Os03g12270 | Os03g0223200 | - | Detail |
| C1H3g19225 | 3:5,739,506-5,740,695 | - | C2H3g16993 | CX3g028859 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| C1H3g05930 | 3:5,741,048-5,743,366 | - | C2H3g28472 | CX3g028859 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| C1H3g02751 | 3:5,747,807-5,755,905 | - | C2H3g01042 | CX3g025777 | LOC_Os03g12300 | Os03g0223700 | - | Detail |
| C1H3g05662 | 3:5,768,070-5,772,723 | + | C2H3g20060 | CX3g029397 | LOC_Os03g12320 | Os03g0223900 | OsLPXC | Detail |
| C1H3g16565 | 3:5,781,460-5,786,781 | + | C2H3g29213 | CX3g029992 | LOC_Os03g12350 | Os03g0224200 | - | Detail |
| C1H3g12418 | 3:5,787,327-5,791,771 | - | C2H3g11335 | CX3g029383 | LOC_Os03g12360 | Os03g0224300 | - | Detail |
| C1H3g18389 | 3:5,803,605-5,807,389 | + | C2H3g05885 | CX3g025920 | LOC_Os03g12370 | Os03g0224700 | - | Detail |
| C1H3g09012 | 3:5,811,317-5,812,336 | - | C2H3g25300 | CX3g025136 | LOC_Os03g12390 | Os03g0225100 | MPKK10.2, OsMKK10-2, MKK10-2D | Detail |
| C1H3g14793 | 3:5,818,975-5,823,594 | - | C2H3g05543 | CX3g027495 | LOC_Os03g12414 | Os03g0225200 | - | Detail |
| C1H3g12506 | 3:5,824,997-5,826,409 | - | C2H3g22350 | CX3g027176 | LOC_Os03g12430 | Os03g0225300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g055725 | 9:19,079,879-19,080,487 | - | C1H9g27301 | C2H9g14838 | LOC_Os09g38110 | Os09g0554200 | - | Detail |
| CX9g057048 | 9:19,089,073-19,091,428 | + | C1H9g27672 | C2H9g06100 | LOC_Os09g38130 | Os09g0554300 | OsPILS7a | Detail |
| CX9g057828 | 9:19,097,966-19,104,785 | + | C1H9g05514 | C2H9g22067 | LOC_Os09g38239 | Os09g0555150 | - | Detail |
| CX9g057564 | 9:19,108,920-19,122,940 | + | C1H9g12988 | - | LOC_Os09g38268 | Os09g0555200 | OsNRPD1b, OsNRPD1 | Detail |
| CX9g057692 | 9:19,125,084-19,126,847 | + | C1H9g08888 | - | LOC_Os09g38300 | Os09g0555300 | - | Detail |
| CX9g056693 | 9:19,133,246-19,135,682 | - | C1H9g00138 | C2H9g08531 | LOC_Os09g38320 | Os09g0555500 | OsPSY3 | Detail |
| CX9g056039 | 9:19,140,068-19,148,151 | - | C1H9g26155 | C2H9g15848 | LOC_Os09g38330 | Os09g0555600 | - | Detail |
| CX9g055465 | 9:19,159,681-19,163,599 | + | C1H9g21016 | C2H11g00078 | LOC_Os11g41720 | - | - | Detail |
| CX9g056277 | 9:19,168,920-19,174,008 | - | C1H9g28461 | C2H9g23507 | LOC_Os09g38340 | Os09g0555700 | - | Detail |
| CX9g056374 | 9:19,189,057-19,191,075 | - | C1H9g19146 | C2H9g16440 | LOC_Os09g38350 | Os09g0555800 | OsCNL2 | Detail |
| CX9g056720 | 9:19,198,807-19,201,426 | - | C1H9g02315 | C2H9g26103 | LOC_Os09g38370 | Os09g0556000 | - | Detail |
| CX9g056177 | 9:19,205,203-19,207,529 | + | C1H9g14465 | C2H9g08303 | LOC_Os09g38390 | Os09g0556200 | - | Detail |
| CX9g056439 | 9:19,211,130-19,213,273 | + | C1H9g23531 | C2H9g24654 | LOC_Os09g38400 | - | - | Detail |
| CX9g057830 | 9:19,214,470-19,220,447 | - | C1H9g07170 | C2H9g15218 | LOC_Os09g38410 | Os09g0556400 | OsPHT4;5 | Detail |
| CX9g056846 | 9:19,221,871-19,227,194 | - | C1H9g24737 | C2H9g15403 | LOC_Os09g38420 | Os09g0556500 | - | Detail |
| CX9g057664 | 9:19,229,883-19,240,532 | + | C1H9g30681 | C2H9g02251 | LOC_Os09g38440 | Os09g0556700 | - | Detail |
| CX9g058159 | 9:19,240,965-19,242,985 | - | C1H9g19768 | C2H9g19914 | LOC_Os09g38450 | Os09g0556800 | - | Detail |
| CX9g054863 | 9:19,247,102-19,248,892 | + | C1H9g29064 | C2H9g21049 | LOC_Os09g38470 | Os09g0558600 | - | Detail |
| CX9g057682 | 9:19,251,185-19,253,310 | + | C1H9g16942 | C2H9g08319 | LOC_Os09g38490 | Os09g0558600 | - | Detail |
| CX9g057136 | 9:19,256,211-19,257,061 | - | C1H9g30179 | C2H9g11110 | LOC_Os09g38500 | Os09g0557400 | - | Detail |