| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08986 | 3:11,128,853-11,130,496 | + | C2H3g27980 | CX3g026570 | LOC_Os03g21780 | Os03g0336000 | - | Detail |
| C1H3g23089 | 3:11,131,255-11,133,411 | - | C2H3g07010 | CX3g026449 | LOC_Os03g21790 | Os03g0336100 | FLOC3 | Detail |
| C1H3g19738 | 3:11,136,064-11,139,294 | + | C2H3g10640 | CX3g026687 | LOC_Os03g21800 | Os03g0336200 | - | Detail |
| C1H3g27626 | 3:11,143,575-11,154,159 | + | C2H3g27830 | CX3g028160 | LOC_Os03g21810 | Os03g0336300 | - | Detail |
| C1H3g30217 | 3:11,154,816-11,155,709 | - | C2H3g18341 | CX3g030935 | LOC_Os03g21820 | Os03g0336400 | - | Detail |
| C1H3g28885 | 3:11,169,242-11,172,338 | + | C2H3g17317 | CX3g028604 | LOC_Os03g21830 | Os03g0336500 | - | Detail |
| C1H3g10280 | 3:11,173,500-11,175,446 | - | C2H3g25854 | CX3g028387 | LOC_Os03g21840 | Os03g0336600 | - | Detail |
| C1H3g24720 | 3:11,178,138-11,181,445 | - | C2H3g04362 | - | - | - | - | Detail |
| C1H3g01271 | 3:11,191,795-11,198,911 | + | C2H3g05433 | CX3g031093 | LOC_Os03g21850 | Os03g0336700 | - | Detail |
| C1H3g17351 | 3:11,211,186-11,212,106 | - | C2H3g01245 | CX3g028904 | LOC_Os03g21870 | Os03g0336900 | - | Detail |
| C1H3g11607 | 3:11,217,673-11,217,930 | + | - | CX3g025352 | LOC_Os03g21880 | Os03g0337000 | - | Detail |
| C1H3g00780 | 3:11,223,405-11,224,102 | - | C2H3g01707 | CX3g028881 | - | - | - | Detail |
| C1H3g03171 | 3:11,227,280-11,237,870 | + | C2H3g03273 | CX3g031266 | LOC_Os03g21890 | Os03g0337500 | OsHAK8 | Detail |
| C1H3g23175 | 3:11,239,163-11,243,862 | - | C2H3g09138 | CX3g025972 | LOC_Os03g21914 | Os03g0714400 | - | Detail |
| C1H3g14863 | 3:11,245,308-11,247,551 | - | C2H3g27608 | CX3g028145 | LOC_Os03g21940 | Os03g0337800 | - | Detail |
| C1H3g25051 | 3:11,249,078-11,255,269 | - | C2H3g02212 | CX3g030549 | LOC_Os03g21950 | Os03g0337900 | - | Detail |
| C1H3g24711 | 3:11,260,550-11,263,372 | - | C2H3g08593 | CX3g028858 | LOC_Os03g21960 | Os03g0338000 | - | Detail |
| C1H3g23812 | 3:11,292,970-11,295,206 | + | C2H3g29715 | CX3g025638 | LOC_Os03g21970 | Os03g0338400 | - | Detail |
| C1H3g31030 | 3:11,297,782-11,301,352 | - | C2H3g29506 | CX3g030282 | LOC_Os03g21980 | Os03g0338600 | - | Detail |
| C1H3g02489 | 3:11,333,288-11,333,906 | - | C2H3g21921 | CX3g028477 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g057667 | 9:18,934,454-18,953,841 | - | C1H9g22027 | C2H9g10203 | LOC_Os09g37810 | Os09g0551251 | SDK11 | Detail |
| CX9g055805 | 9:18,959,589-18,964,613 | + | C1H9g23922 | C2H9g23601 | LOC_Os09g37860 | Os09g0551300 | - | Detail |
| CX9g055993 | 9:18,973,146-18,976,988 | + | C1H9g22027 | C2H9g18325 | LOC_Os09g37840 | Os09g0551400 | SDRLK-42 | Detail |
| CX9g055121 | 9:18,978,689-18,982,119 | - | C1H9g23767 | C2H9g05665 | LOC_Os09g37840 | Os09g0551500 | SDRLK-43 | Detail |
| CX9g055996 | 9:18,992,467-18,994,266 | + | C1H9g20157 | C2H9g09248 | LOC_Os09g37910 | Os09g0551600 | - | Detail |
| CX9g055169 | 9:18,996,007-19,003,574 | - | C1H9g09501 | C2H9g00765 | LOC_Os09g37920 | Os09g0551800 | - | Detail |
| CX9g057646 | 9:19,004,274-19,013,209 | - | C1H9g15933 | C2H9g18827 | LOC_Os09g37930 | Os09g0551900 | OsMLH3, FSV1 | Detail |
| CX9g054990 | 9:19,015,733-19,018,510 | - | C1H9g08089 | C2H9g26371 | LOC_Os09g37949 | Os09g0552300 | - | Detail |
| CX9g055948 | 9:19,021,544-19,022,973 | - | C1H9g25273 | C2H9g23182 | LOC_Os09g37976 | Os09g0552600 | - | Detail |
| CX9g056393 | 9:19,025,267-19,026,425 | - | C1H9g09840 | C2H9g28554 | LOC_Os09g37976 | Os09g0552600 | - | Detail |
| CX9g054872 | 9:19,030,059-19,032,327 | + | C1H9g15676 | C2H9g14226 | LOC_Os09g38000 | Os09g0552800 | OsNAC109, YL3 | Detail |
| CX9g057788 | 9:19,034,898-19,037,029 | + | C1H9g26813 | C2H9g12533 | LOC_Os09g38010 | Os09g0552900 | - | Detail |
| CX9g057780 | 9:19,039,349-19,039,660 | - | C1H9g21147 | C2H2g23208 | LOC_Os09g38020 | Os09g0553100 | - | Detail |
| CX9g055376 | 9:19,044,173-19,048,934 | + | C1H9g17635 | C2H9g10941 | LOC_Os09g38030 | Os09g0553200 | UGP1, Ugp1, OsUgp1, UGP2, UGP3 | Detail |
| CX9g058064 | 9:19,050,067-19,052,812 | - | C1H9g26934 | C2H9g21953 | LOC_Os09g38040 | Os09g0553300 | - | Detail |
| CX9g057793 | 9:19,054,130-19,054,942 | + | - | - | - | - | - | Detail |
| CX9g056104 | 9:19,057,278-19,060,648 | + | C1H9g10869 | C2H9g19006 | LOC_Os09g38060 | Os09g0553600 | - | Detail |
| CX9g057943 | 9:19,067,533-19,069,359 | + | C1H9g00595 | C2H9g05592 | LOC_Os09g38080 | Os09g0553800 | - | Detail |
| CX9g057138 | 9:19,070,097-19,072,763 | + | C1H9g10302 | - | LOC_Os09g38090 | Os09g0553900 | - | Detail |
| CX9g057604 | 9:19,074,279-19,076,239 | - | C1H9g31011 | C2H9g14746 | LOC_Os09g38100 | Os09g0554000 | - | Detail |