| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04729 | 3:4,611,926-4,613,460 | - | C2H3g24222 | CX3g030929 | LOC_Os03g10210 | Os03g0198600 | HOX12, Oshox12, OsHox12, GT1 | Detail |
| C1H3g24941 | 3:4,626,118-4,626,506 | + | C2H3g01513 | - | - | - | - | Detail |
| C1H3g23090 | 3:4,634,713-4,636,287 | - | C2H3g16295 | CX3g026889 | LOC_Os03g10220 | - | - | Detail |
| C1H3g13438 | 3:4,637,520-4,640,553 | - | C2H3g19804 | CX3g026154 | LOC_Os03g10224 | Os03g0198900 | - | Detail |
| C1H3g16749 | 3:4,640,745-4,645,102 | + | C2H3g09522 | CX3g028745 | LOC_Os03g10230 | Os03g0199000 | - | Detail |
| C1H3g12272 | 3:4,650,035-4,651,210 | + | C2H3g01585 | CX3g029096 | LOC_Os03g10240 | Os03g0199100 | - | Detail |
| C1H3g00274 | 3:4,660,923-4,662,003 | - | C2H3g23420 | CX3g031305 | LOC_Os03g10260 | Os03g0199500 | - | Detail |
| C1H3g07008 | 3:4,678,681-4,679,923 | + | C2H3g26891 | CX3g025392 | LOC_Os03g10300 | Os03g0200000 | - | Detail |
| C1H3g12286 | 3:4,687,802-4,689,563 | + | C2H3g01636 | CX3g029912 | LOC_Os03g10320 | Os03g0200200 | - | Detail |
| C1H3g29696 | 3:4,695,612-4,696,359 | + | C2H3g23926 | CX3g028962 | - | - | - | Detail |
| C1H3g13020 | 3:4,697,511-4,699,802 | + | C2H3g07176 | CX3g025427 | LOC_Os03g10340 | Os03g0200500 | - | Detail |
| C1H3g29298 | 3:4,699,933-4,704,069 | - | C2H3g17766 | CX3g027963 | LOC_Os03g10350 | Os03g0200600 | OsTPR075 | Detail |
| C1H3g01933 | 3:4,707,172-4,710,106 | - | C2H3g08890 | CX3g025362 | LOC_Os03g10360 | Os03g0200700 | - | Detail |
| C1H3g30301 | 3:4,711,278-4,713,578 | - | C2H3g09465 | CX3g031231 | LOC_Os03g10370 | Os03g0200800 | - | Detail |
| C1H3g28372 | 3:4,717,317-4,719,594 | + | C2H3g19650 | CX3g028366 | LOC_Os03g10390 | Os03g0201000 | - | Detail |
| C1H3g07769 | 3:4,719,979-4,724,128 | - | C2H3g21201 | CX3g026809 | LOC_Os03g10400 | Os03g0201100 | - | Detail |
| C1H3g03267 | 3:4,724,286-4,726,332 | + | C2H3g08749 | - | LOC_Os03g10410 | Os03g0201200 | - | Detail |
| C1H3g26783 | 3:4,726,856-4,729,237 | + | C2H3g27980 | CX3g027641 | LOC_Os03g10420 | Os03g0201400 | - | Detail |
| C1H3g14289 | 3:4,739,963-4,742,807 | + | C2H3g05108 | CX3g026129 | LOC_Os03g10440 | Os03g0201500 | OsMORE1a | Detail |
| C1H3g07517 | 3:4,743,790-4,746,012 | - | C2H3g04674 | CX3g029780 | LOC_Os03g10450 | Os03g0201600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g057441 | 9:18,754,407-18,757,014 | - | C1H9g03915 | C2H9g26899 | LOC_Os09g37510 | Os09g0547200 | - | Detail |
| CX9g057908 | 9:18,757,860-18,758,443 | + | C1H9g24811 | C2H9g14355 | LOC_Os09g37610 | Os09g0548300 | - | Detail |
| CX9g056795 | 9:18,778,335-18,782,920 | + | C1H9g15355 | C2H9g03178 | LOC_Os09g37520 | Os09g0547300 | - | Detail |
| CX9g054942 | 9:18,795,708-18,797,332 | + | C1H9g27743 | C2H9g17799 | LOC_Os09g37540 | Os09g0547500 | LOGL9 | Detail |
| CX9g055014 | 9:18,803,635-18,815,990 | + | C1H9g22751 | C2H9g03194 | LOC_Os09g37580 | Os09g0547800 | - | Detail |
| CX9g058170 | 9:18,822,269-18,825,957 | + | C1H9g12329 | C2H9g22088 | LOC_Os09g37590 | Os09g0548100 | - | Detail |
| CX9g056357 | 9:18,829,760-18,832,240 | + | C1H9g18410 | C2H9g30052 | LOC_Os09g37600 | Os09g0548200 | - | Detail |
| CX9g055652 | 9:18,833,278-18,837,243 | + | C1H9g24811 | C2H9g14355 | LOC_Os09g37610 | Os09g0548300 | - | Detail |
| CX9g055960 | 9:18,843,936-18,845,000 | + | C1H9g18904 | C2H9g27079 | LOC_Os09g37640 | Os09g0548600 | - | Detail |
| CX9g055964 | 9:18,845,479-18,848,185 | - | C1H9g05052 | C2H9g10997 | LOC_Os09g37650 | Os09g0548700 | - | Detail |
| CX9g058080 | 9:18,868,023-18,869,874 | - | C1H9g02279 | C2H9g30567 | LOC_Os09g37690 | Os09g0549300 | - | Detail |
| CX9g055037 | 9:18,873,216-18,874,810 | + | C1H9g28309 | C2H9g13697 | LOC_Os09g37700 | Os09g0549400 | - | Detail |
| CX9g055826 | 9:18,879,787-18,883,811 | + | C1H9g00407 | C2H9g27020 | LOC_Os09g37710 | Os09g0549450 | OsNLP4 | Detail |
| CX9g057808 | 9:18,886,504-18,887,283 | - | C1H9g10891 | C2H9g00777 | LOC_Os09g37720 | Os09g0549500 | - | Detail |
| CX9g055520 | 9:18,888,207-18,889,293 | + | C1H9g05700 | C2H9g07668 | LOC_Os09g37730 | Os09g0549600 | - | Detail |
| CX9g057767 | 9:18,889,584-18,889,952 | - | C1H9g13469 | C2H9g00404 | LOC_Os09g37740 | Os09g0549700 | - | Detail |
| CX9g055225 | 9:18,891,294-18,891,581 | + | - | - | - | - | - | Detail |
| CX9g055069 | 9:18,892,591-18,893,121 | - | - | - | - | - | - | Detail |
| CX9g057689 | 9:18,894,487-18,894,657 | + | - | - | - | Os01g0307624 | - | Detail |
| CX9g057557 | 9:18,901,681-18,906,854 | - | C1H9g12992 | C2H9g30039 | LOC_Os09g37760 | Os09g0550000 | - | Detail |