| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g22239 | 9:15,387,857-15,388,476 | + | - | CX9g056123 | - | - | - | Detail |
| C1H9g10463 | 9:15,390,930-15,396,579 | - | C2H9g25938 | CX9g055724 | LOC_Os09g31090 | Os09g0484300 | - | Detail |
| C1H9g25991 | 9:15,404,902-15,405,309 | + | - | CX9g056981 | LOC_Os09g31100 | - | - | Detail |
| C1H9g21053 | 9:15,411,915-15,412,343 | + | C2H9g09529 | CX9g056137 | LOC_Os09g31120 | Os09g0484800 | - | Detail |
| C1H9g25716 | 9:15,412,962-15,413,769 | + | C2H9g09529 | CX9g056137 | LOC_Os09g31120 | Os09g0484800 | - | Detail |
| C1H9g21552 | 9:15,420,705-15,423,279 | + | C2H9g06729 | CX9g055844 | LOC_Os09g31130 | Os09g0484900 | - | Detail |
| C1H9g28280 | 9:15,445,388-15,450,064 | + | C2H9g05554 | CX9g057232 | LOC_Os09g31140 | Os09g0485600 | - | Detail |
| C1H9g16686 | 9:15,458,593-15,459,470 | + | C2H9g12865 | CX9g057421 | LOC_Os09g31170 | Os09g0485800 | - | Detail |
| C1H9g09571 | 9:15,459,801-15,461,525 | - | C2H9g08271 | CX9g056446 | LOC_Os09g31180 | Os09g0485900 | - | Detail |
| C1H9g07652 | 9:15,461,954-15,462,514 | + | C2H9g15653 | - | LOC_Os09g31190 | Os09g0486000 | - | Detail |
| C1H9g10100 | 9:15,467,286-15,467,780 | + | C2H9g10052 | CX9g058060 | LOC_Os09g31200 | Os09g0486500 | SAP1, Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1 | Detail |
| C1H9g04466 | 9:15,478,347-15,479,720 | + | C2H9g09908 | CX9g056228 | LOC_Os09g31210 | Os09g0486700 | OsAGC18 | Detail |
| C1H9g26143 | 9:15,487,243-15,492,467 | - | C2H9g06324 | CX9g057251 | LOC_Os09g31230 | Os09g0487200 | - | Detail |
| C1H9g26058 | 9:15,500,570-15,500,923 | - | C2H8g28041 | CX9g055951 | LOC_Os09g31260 | Os09g0487500 | - | Detail |
| C1H9g29280 | 9:15,501,853-15,504,293 | - | C2H9g10558 | CX9g058148 | LOC_Os09g31270 | Os09g0487600 | - | Detail |
| C1H9g01267 | 9:15,507,404-15,510,950 | + | C2H9g06481 | CX9g055842 | LOC_Os09g31280 | Os09g0487700 | - | Detail |
| C1H9g18482 | 9:15,516,863-15,517,405 | + | C2H9g17245 | CX9g055017 | LOC_Os09g31300 | Os09g0487900 | OsbHLH130 | Detail |
| C1H9g06099 | 9:15,517,524-15,518,950 | + | C2H9g27532 | CX9g055017 | LOC_Os09g31300 | Os09g0487900 | OsbHLH130 | Detail |
| C1H9g24450 | 9:15,527,398-15,527,895 | - | - | CX9g056925 | LOC_Os09g31310 | Os09g0488000 | OsGNA1 | Detail |
| C1H9g04944 | 9:15,542,267-15,544,409 | + | C2H9g14003 | CX9g057197 | LOC_Os09g31350 | Os09g0488600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001474 | 1:30,819,642-30,821,695 | - | C1H1g22292 | C2H1g06177 | LOC_Os01g59910 | Os01g0814700 | - | Detail |
| CX1g002402 | 1:30,823,119-30,826,267 | - | C1H1g15127 | C2H1g04713 | LOC_Os01g59920 | Os01g0814800 | GRA78 | Detail |
| CX1g004755 | 1:30,827,370-30,830,283 | - | C1H1g12031 | C2H1g29671 | LOC_Os01g59930 | Os01g0814900 | - | Detail |
| CX1g003647 | 1:30,837,192-30,838,650 | - | - | - | - | Os01g0815100 | - | Detail |
| CX1g002474 | 1:30,842,202-30,842,363 | + | - | - | LOC_Os11g12240 | Os11g0476333 | - | Detail |
| CX1g000143 | 1:30,856,598-30,860,724 | + | C1H1g20676 | C2H1g07239 | LOC_Os01g59980 | Os01g0815700 | - | Detail |
| CX1g004658 | 1:30,862,841-30,864,289 | + | C1H1g31003 | C2H1g17151 | LOC_Os01g59990 | Os01g0815800 | - | Detail |
| CX1g001519 | 1:30,865,273-30,868,879 | - | C1H1g02777 | C2H1g11561 | LOC_Os01g60000 | Os01g0815900 | - | Detail |
| CX1g001573 | 1:30,869,271-30,870,839 | + | C1H1g09791 | C2H1g13748 | LOC_Os01g60010 | Os01g0816000 | - | Detail |
| CX1g005248 | 1:30,872,438-30,873,597 | - | C1H1g00772 | C2H1g09624 | LOC_Os01g60020 | Os01g0816100 | OsNAC4 | Detail |
| CX1g005963 | 1:30,880,114-30,880,266 | - | - | - | - | Os01g0693532 | - | Detail |
| CX1g002744 | 1:30,885,996-30,902,049 | - | C1H1g15712 | C2H1g09286 | LOC_Os01g60040 | Os01g0816400 | - | Detail |
| CX1g001742 | 1:30,917,502-30,922,556 | + | C1H1g04794 | C2H1g04146 | LOC_Os01g60060 | Os01g0816600 | - | Detail |
| CX1g006929 | 1:30,925,704-30,927,565 | + | C1H1g24879 | C2H1g25178 | LOC_Os01g60080 | Os01g0816700 | - | Detail |
| CX1g001408 | 1:30,932,844-30,935,692 | - | C1H1g23182 | C2H1g12383 | LOC_Os01g60110 | Os01g0817000 | - | Detail |
| CX1g001908 | 1:30,938,815-30,941,681 | - | C1H1g20937 | C2H1g27536 | LOC_Os01g60120 | Os01g0817100 | - | Detail |
| CX1g005873 | 1:30,946,896-30,949,767 | + | C1H1g16273 | C2H1g05301 | LOC_Os01g60140 | Os01g0817400 | - | Detail |
| CX1g006550 | 1:30,950,494-30,950,790 | + | C1H1g27130 | - | - | - | - | Detail |
| CX1g004355 | 1:30,950,931-30,951,863 | - | C1H1g15906 | C2H1g04044 | - | - | - | Detail |
| CX1g005295 | 1:30,957,201-30,957,437 | + | - | - | - | Os01g0728000 | - | Detail |