| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g01677 | 3:1,883,766-1,887,423 | - | C1H3g00456 | CX3g025825 | LOC_Os03g04620 | Os03g0139500 | - | Detail |
| C2H3g16470 | 3:1,893,023-1,894,552 | + | C1H3g23782 | CX3g025500 | LOC_Os03g04630 | Os03g0139600 | - | Detail |
| C2H3g12777 | 3:1,933,825-1,935,351 | + | C1H3g00353 | CX3g025500 | LOC_Os03g04650 | Os03g0140100 | - | Detail |
| C2H3g27330 | 3:1,940,534-1,942,090 | + | C1H3g25985 | CX3g025500 | LOC_Os03g04660 | Os03g0140200 | CYP96B5, WSL5 | Detail |
| C2H3g29153 | 3:1,951,839-1,953,458 | + | C1H3g15064 | CX3g025500 | LOC_Os03g04680 | Os03g0140400 | SD37, OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1 | Detail |
| C2H3g12329 | 3:1,955,457-1,958,399 | - | C1H3g07260 | CX3g029016 | LOC_Os03g16950 | Os03g0140500 | - | Detail |
| C2H3g13203 | 3:1,964,827-1,965,304 | - | C1H3g31769 | CX3g026380 | - | Os03g0140650 | - | Detail |
| C2H3g17473 | 3:1,987,231-1,988,894 | + | C1H3g10738 | CX3g028112 | LOC_Os03g04710 | Os03g0140700 | - | Detail |
| C2H3g05466 | 3:1,992,006-1,992,782 | + | - | - | - | - | - | Detail |
| C2H3g05277 | 3:1,993,925-1,996,800 | + | C1H3g01474 | CX3g029285 | LOC_Os03g04740 | Os03g0140900 | - | Detail |
| C2H3g19470 | 3:1,997,560-1,999,274 | + | C1H3g10114 | CX3g030261 | LOC_Os03g04750 | Os03g0141000 | - | Detail |
| C2H3g09892 | 3:2,001,052-2,004,476 | + | C1H3g00645 | CX3g026884 | LOC_Os03g04770 | Os03g0141200 | OsBMY4 | Detail |
| C2H3g00749 | 3:2,005,294-2,005,643 | - | C1H3g11403 | CX3g028262 | LOC_Os03g04780 | Os03g0286500 | - | Detail |
| C2H3g24267 | 3:2,008,300-2,011,820 | + | C1H3g11848 | CX3g024968 | LOC_Os03g04830 | Os03g0141700 | - | Detail |
| C2H3g24637 | 3:2,014,747-2,017,084 | + | C1H3g03155 | CX3g027335 | LOC_Os03g04840 | Os03g0141800 | - | Detail |
| C2H3g16825 | 3:2,025,016-2,028,837 | + | C1H3g16077 | CX3g027335 | LOC_Os03g04870 | Os03g0142200 | - | Detail |
| C2H3g26010 | 3:2,035,008-2,038,711 | + | C1H3g31558 | CX3g030528 | LOC_Os03g04890 | Os03g0142500 | - | Detail |
| C2H3g05143 | 3:2,039,567-2,040,522 | - | C1H3g10254 | CX3g030147 | LOC_Os03g04900 | Os03g0142600 | Os2R_MYB33 | Detail |
| C2H3g20094 | 3:2,061,134-2,067,861 | + | C1H3g19270 | CX3g030977 | LOC_Os03g04920 | Os03g0142800 | - | Detail |
| C2H3g26910 | 3:2,068,501-2,074,019 | - | C1H3g30404 | CX3g029043 | LOC_Os03g04930 | Os03g0142900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g057403 | 9:18,418,952-18,421,570 | + | C1H9g18894 | C2H9g12389 | LOC_Os09g36820 | Os09g0539400 | - | Detail |
| CX9g056828 | 9:18,422,685-18,424,984 | - | C1H9g22954 | C2H9g19569 | LOC_Os09g36830 | Os09g0539500 | - | Detail |
| CX9g057934 | 9:18,430,661-18,431,302 | - | C1H9g17737 | - | LOC_Os09g36850 | Os09g0539700 | - | Detail |
| CX9g055116 | 9:18,432,959-18,435,473 | - | C1H9g21022 | C2H9g22706 | LOC_Os09g36860 | Os09g0539800 | - | Detail |
| CX9g056698 | 9:18,440,789-18,442,204 | + | C1H9g12571 | C2H9g13623 | LOC_Os09g36870 | Os09g0540300 | - | Detail |
| CX9g056143 | 9:18,442,883-18,444,653 | - | C1H9g06205 | C2H9g18485 | LOC_Os09g36880 | Os09g0540400 | - | Detail |
| CX9g056433 | 9:18,447,227-18,448,471 | - | C1H9g24059 | - | LOC_Os09g36890 | Os09g0540500 | - | Detail |
| CX9g055896 | 9:18,448,723-18,452,623 | + | C1H9g23063 | C2H9g22888 | LOC_Os09g36900 | Os09g0540600 | - | Detail |
| CX9g055478 | 9:18,453,612-18,453,911 | - | - | - | - | - | - | Detail |
| CX9g055766 | 9:18,465,629-18,466,495 | + | C1H9g23615 | C2H9g26403 | LOC_Os09g36910 | Os09g0540800 | BZIP77, OsbZIP77, OsFD1 | Detail |
| CX9g055175 | 9:18,479,940-18,481,431 | - | C1H9g26475 | C2H9g30227 | LOC_Os09g36920 | Os09g0540900 | - | Detail |
| CX9g056388 | 9:18,487,372-18,488,351 | + | C1H9g19249 | C2H9g19063 | LOC_Os09g36930 | Os09g0541000 | - | Detail |
| CX9g057449 | 9:18,490,661-18,491,334 | - | C1H9g27842 | C2H9g09532 | LOC_Os09g36940 | Os09g0541100 | - | Detail |
| CX9g055353 | 9:18,493,243-18,493,650 | + | - | - | LOC_Os09g36950 | - | - | Detail |
| CX9g056802 | 9:18,498,068-18,498,472 | + | C1H9g10857 | - | LOC_Os09g36960 | Os09g0541300 | - | Detail |
| CX9g056872 | 9:18,504,928-18,505,281 | - | - | C2H9g16338 | - | - | - | Detail |
| CX9g057965 | 9:18,506,480-18,506,734 | - | - | - | - | - | - | Detail |
| CX9g055205 | 9:18,508,007-18,509,889 | - | C1H9g05693 | C2H9g14047 | LOC_Os09g36976 | Os09g0541500 | - | Detail |
| CX9g056518 | 9:18,511,173-18,512,842 | - | C1H9g25058 | C2H9g00965 | LOC_Os09g36982 | Os09g0541600 | - | Detail |
| CX9g058033 | 9:18,514,345-18,515,862 | + | C1H9g02735 | C2H9g20569 | LOC_Os09g36990 | Os09g0541700 | - | Detail |