| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g01335 | 9:3,289,050-3,290,751 | - | C1H9g14985 | CX9g055027 | LOC_Os09g07020 | Os09g0245500 | - | Detail |
| C2H9g28734 | 9:3,292,410-3,297,012 | - | C1H9g14985 | CX9g055027 | LOC_Os09g07450 | Os09g0245500 | - | Detail |
| C2H9g02331 | 9:3,298,992-3,299,303 | - | C1H9g18619 | - | - | - | - | Detail |
| C2H9g06448 | 9:3,302,793-3,306,557 | - | C1H9g27878 | CX9g057597 | LOC_Os09g07460 | Os09g0249000 | - | Detail |
| C2H9g20745 | 9:3,316,134-3,319,656 | + | C1H9g24582 | CX9g056442 | LOC_Os09g07480 | Os09g0249400 | - | Detail |
| C2H9g06831 | 9:3,321,246-3,325,339 | - | C1H9g20835 | CX9g058158 | LOC_Os09g07500 | Os09g0249600 | - | Detail |
| C2H9g07458 | 9:3,328,817-3,335,150 | - | C1H9g20701 | CX9g054955 | LOC_Os09g07510 | Os09g0249700 | - | Detail |
| C2H9g12303 | 9:3,342,606-3,346,521 | + | C1H9g00474 | CX9g057433 | LOC_Os09g07570 | Os09g0249900 | - | Detail |
| C2H9g13423 | 9:3,347,479-3,356,560 | - | C1H9g08915 | CX9g058038 | LOC_Os09g07590 | - | - | Detail |
| C2H9g30220 | 9:3,451,766-3,453,788 | - | C1H9g11366 | - | - | - | - | Detail |
| C2H9g19501 | 9:3,461,474-3,475,487 | + | C1H9g03513 | CX9g055768 | LOC_Os03g06900 | Os03g0165000 | TOP3α | Detail |
| C2H9g12401 | 9:3,482,410-3,490,224 | + | C1H9g17448 | CX9g056142 | LOC_Os09g07660 | Os09g0250700 | - | Detail |
| C2H9g30619 | 9:3,496,448-3,499,501 | - | C1H9g00213 | CX9g056929 | LOC_Os09g07670 | Os09g0250800 | - | Detail |
| C2H9g12991 | 9:3,508,670-3,510,171 | - | C1H9g00213 | CX9g057043 | LOC_Os09g07700 | Os09g0250800 | - | Detail |
| C2H9g12996 | 9:3,524,430-3,525,449 | + | C1H9g26312 | CX9g056138 | LOC_Os09g07780 | Os09g0251500 | - | Detail |
| C2H9g15415 | 9:3,529,560-3,530,862 | + | C1H9g12000 | - | - | Os09g0251450 | - | Detail |
| C2H9g06665 | 9:3,550,379-3,554,009 | + | C1H9g31511 | CX9g057361 | LOC_Os09g07730 | Os09g0251100 | - | Detail |
| C2H9g25970 | 9:3,554,814-3,555,485 | + | C1H9g27075 | - | LOC_Os09g07720 | - | - | Detail |
| C2H9g10088 | 9:3,562,574-3,565,475 | + | C1H9g20803 | CX9g056095 | LOC_Os09g07800 | Os09g0251800 | - | Detail |
| C2H9g03841 | 9:3,572,171-3,575,276 | + | C1H9g11596 | CX9g056028 | LOC_Os09g07820 | Os09g0252000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g055394 | 9:18,297,011-18,298,707 | + | C1H9g00250 | - | LOC_Os09g36630 | Os09g0537200 | - | Detail |
| CX9g057733 | 9:18,299,510-18,301,524 | + | C1H9g06888 | C2H9g02330 | LOC_Os09g36670 | Os09g0537600 | - | Detail |
| CX9g057665 | 9:18,320,720-18,322,711 | + | C1H9g06888 | C2H9g02330 | LOC_Os09g36670 | Os09g0537600 | - | Detail |
| CX9g057345 | 9:18,325,017-18,326,730 | - | C1H9g14336 | C2H9g11788 | LOC_Os09g36680 | Os09g0537700 | RNS4, OsRNS4, OsRRP, RNaseDIS | Detail |
| CX9g056094 | 9:18,330,415-18,330,639 | + | C1H2g02834 | C2H2g08160 | LOC_Os09g36690 | Os03g0695400 | - | Detail |
| CX9g055095 | 9:18,333,714-18,335,697 | - | C1H9g12593 | C2H9g24881 | LOC_Os09g36700 | Os09g0538000 | - | Detail |
| CX9g057133 | 9:18,338,511-18,340,680 | + | C1H9g12194 | C2H9g25356 | LOC_Os09g36710 | Os09g0538200 | - | Detail |
| CX9g057020 | 9:18,350,569-18,350,781 | + | - | - | - | - | - | Detail |
| CX9g055070 | 9:18,352,012-18,352,179 | + | - | - | - | - | - | Detail |
| CX9g055094 | 9:18,354,651-18,354,920 | + | C1H9g18306 | C2H9g08473 | LOC_Os09g32790 | - | - | Detail |
| CX9g055320 | 9:18,366,621-18,370,559 | + | C1H9g10922 | C2H9g18367 | LOC_Os09g32780 | - | - | Detail |
| CX9g055420 | 9:18,372,811-18,373,722 | - | C1H9g31173 | C2H9g08114 | LOC_Os09g36730 | Os09g0538400 | OsMYB108 | Detail |
| CX9g056101 | 9:18,380,141-18,380,566 | - | C1H9g22212 | C2H9g01669 | LOC_Os09g36735 | Os09g0538450 | - | Detail |
| CX9g057786 | 9:18,380,949-18,382,831 | + | C1H9g15664 | C2H9g03742 | LOC_Os09g36740 | Os09g0538500 | MS5 | Detail |
| CX9g056628 | 9:18,383,316-18,387,365 | - | C1H9g23441 | C2H9g08362 | LOC_Os09g36750 | Os09g0538600 | APX9 | Detail |
| CX9g055639 | 9:18,391,065-18,394,984 | + | C1H9g29591 | C2H9g27815 | LOC_Os09g36760 | Os09g0538700 | - | Detail |
| CX9g055160 | 9:18,395,725-18,399,369 | - | C1H9g06893 | C2H9g20614 | LOC_Os09g36770 | Os09g0538800 | - | Detail |
| CX9g055568 | 9:18,405,325-18,405,891 | + | C1H9g05351 | - | LOC_Os09g36790 | Os09g0539000 | - | Detail |
| CX9g056861 | 9:18,406,664-18,409,723 | - | C1H9g17651 | C2H9g01552 | LOC_Os09g36800 | Os09g0539100 | - | Detail |
| CX9g056453 | 9:18,411,497-18,416,813 | + | C1H9g23415 | C2H9g21684 | LOC_Os09g36810 | Os09g0539200 | - | Detail |