| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12704 | 1:4,122,902-4,126,336 | - | C2H1g19620 | CX1g003292 | LOC_Os01g09280 | Os01g0187900 | - | Detail |
| C1H1g28219 | 1:4,132,864-4,137,410 | + | C2H1g02695 | CX1g004066 | LOC_Os01g09300 | Os01g0188100 | - | Detail |
| C1H1g06279 | 1:4,138,323-4,143,537 | - | C2H1g02685 | CX1g002675 | LOC_Os01g09305 | Os01g0188200 | - | Detail |
| C1H1g23164 | 1:4,145,307-4,150,670 | - | C2H1g18571 | CX1g006611 | LOC_Os01g09320 | Os01g0188400 | - | Detail |
| C1H1g03578 | 1:4,167,014-4,168,956 | + | C2H1g19316 | CX1g004426 | LOC_Os01g09430 | Os01g0190000 | - | Detail |
| C1H1g27201 | 1:4,181,851-4,183,988 | + | C2H1g02810 | CX1g006201 | LOC_Os01g09450 | Os01g0190300 | - | Detail |
| C1H1g07672 | 1:4,185,404-4,187,904 | - | C2H1g19091 | CX1g007213 | LOC_Os01g09460 | Os01g0190400 | - | Detail |
| C1H1g15113 | 1:4,193,535-4,195,266 | + | C2H1g26000 | CX1g004108 | LOC_Os01g09470 | Os01g0190500 | GW5L | Detail |
| C1H1g06870 | 1:4,199,867-4,207,905 | + | C2H1g13364 | CX1g003198 | LOC_Os01g14770 | - | - | Detail |
| C1H1g00997 | 1:4,225,143-4,227,006 | - | C2H1g13703 | CX1g002686 | LOC_Os01g09510 | Os01g0191100 | - | Detail |
| C1H1g00651 | 1:4,234,539-4,236,474 | + | C2H1g17347 | CX1g000313 | LOC_Os01g09500 | Os01g0191000 | - | Detail |
| C1H1g26240 | 1:4,236,692-4,238,342 | - | C2H1g04431 | CX1g000803 | LOC_Os01g09540 | Os01g0191200 | - | Detail |
| C1H1g18220 | 1:4,244,795-4,250,385 | - | C2H1g28549 | CX1g002554 | LOC_Os01g09550 | Os01g0191300 | OsNAC006 | Detail |
| C1H1g10376 | 1:4,262,976-4,268,394 | + | C2H1g26380 | CX1g003362 | LOC_Os01g09560 | Os01g0191500 | - | Detail |
| C1H1g21626 | 1:4,277,004-4,280,788 | + | C2H1g02135 | CX1g007135 | LOC_Os01g09570 | Os01g0191700 | - | Detail |
| C1H1g30896 | 1:4,281,723-4,284,862 | - | C2H1g00634 | CX1g004403 | LOC_Os01g09580 | Os01g0191800 | - | Detail |
| C1H1g20220 | 1:4,289,751-4,290,694 | - | C2H1g29230 | CX1g007052 | LOC_Os01g09590 | Os01g0191900 | Os2R_MYB4 | Detail |
| C1H1g28550 | 1:4,332,080-4,333,603 | - | C2H1g07972 | CX1g000801 | LOC_Os01g09640 | Os01g0192300 | - | Detail |
| C1H1g14238 | 1:4,349,054-4,352,184 | - | C2H1g16065 | CX1g006171 | LOC_Os01g09670 | Os01g0192600 | - | Detail |
| C1H1g03026 | 1:4,371,099-4,372,019 | - | C2H1g19735 | CX1g005144 | LOC_Os01g09700 | Os01g0192900 | OS-ACS5 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g055394 | 9:18,297,011-18,298,707 | + | C1H9g00250 | - | LOC_Os09g36630 | Os09g0537200 | - | Detail |
| CX9g057733 | 9:18,299,510-18,301,524 | + | C1H9g06888 | C2H9g02330 | LOC_Os09g36670 | Os09g0537600 | - | Detail |
| CX9g057665 | 9:18,320,720-18,322,711 | + | C1H9g06888 | C2H9g02330 | LOC_Os09g36670 | Os09g0537600 | - | Detail |
| CX9g057345 | 9:18,325,017-18,326,730 | - | C1H9g14336 | C2H9g11788 | LOC_Os09g36680 | Os09g0537700 | RNS4, OsRNS4, OsRRP, RNaseDIS | Detail |
| CX9g056094 | 9:18,330,415-18,330,639 | + | C1H2g02834 | C2H2g08160 | LOC_Os09g36690 | Os03g0695400 | - | Detail |
| CX9g055095 | 9:18,333,714-18,335,697 | - | C1H9g12593 | C2H9g24881 | LOC_Os09g36700 | Os09g0538000 | - | Detail |
| CX9g057133 | 9:18,338,511-18,340,680 | + | C1H9g12194 | C2H9g25356 | LOC_Os09g36710 | Os09g0538200 | - | Detail |
| CX9g057020 | 9:18,350,569-18,350,781 | + | - | - | - | - | - | Detail |
| CX9g055070 | 9:18,352,012-18,352,179 | + | - | - | - | - | - | Detail |
| CX9g055094 | 9:18,354,651-18,354,920 | + | C1H9g18306 | C2H9g08473 | LOC_Os09g32790 | - | - | Detail |
| CX9g055320 | 9:18,366,621-18,370,559 | + | C1H9g10922 | C2H9g18367 | LOC_Os09g32780 | - | - | Detail |
| CX9g055420 | 9:18,372,811-18,373,722 | - | C1H9g31173 | C2H9g08114 | LOC_Os09g36730 | Os09g0538400 | OsMYB108 | Detail |
| CX9g056101 | 9:18,380,141-18,380,566 | - | C1H9g22212 | C2H9g01669 | LOC_Os09g36735 | Os09g0538450 | - | Detail |
| CX9g057786 | 9:18,380,949-18,382,831 | + | C1H9g15664 | C2H9g03742 | LOC_Os09g36740 | Os09g0538500 | MS5 | Detail |
| CX9g056628 | 9:18,383,316-18,387,365 | - | C1H9g23441 | C2H9g08362 | LOC_Os09g36750 | Os09g0538600 | APX9 | Detail |
| CX9g055639 | 9:18,391,065-18,394,984 | + | C1H9g29591 | C2H9g27815 | LOC_Os09g36760 | Os09g0538700 | - | Detail |
| CX9g055160 | 9:18,395,725-18,399,369 | - | C1H9g06893 | C2H9g20614 | LOC_Os09g36770 | Os09g0538800 | - | Detail |
| CX9g055568 | 9:18,405,325-18,405,891 | + | C1H9g05351 | - | LOC_Os09g36790 | Os09g0539000 | - | Detail |
| CX9g056861 | 9:18,406,664-18,409,723 | - | C1H9g17651 | C2H9g01552 | LOC_Os09g36800 | Os09g0539100 | - | Detail |
| CX9g056453 | 9:18,411,497-18,416,813 | + | C1H9g23415 | C2H9g21684 | LOC_Os09g36810 | Os09g0539200 | - | Detail |