| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g12084 | 3:3,779,736-3,782,943 | - | C2H3g02721 | CX3g026547 | LOC_Os03g08450 | Os03g0182700 | - | Detail |
| C1H3g13610 | 3:3,784,188-3,786,284 | - | C2H3g09094 | CX3g030128 | LOC_Os03g08460 | Os03g0182800 | OsEBP89 | Detail |
| C1H3g04941 | 3:3,789,437-3,791,231 | - | C2H3g06008 | CX3g031280 | LOC_Os03g08470 | Os03g0183000 | - | Detail |
| C1H3g08056 | 3:3,797,172-3,802,194 | - | C2H3g02534 | - | LOC_Os03g08480 | Os03g0183100 | - | Detail |
| C1H3g18658 | 3:3,805,932-3,806,924 | - | C2H3g29975 | CX3g030128 | LOC_Os03g08490 | Os03g0183200 | - | Detail |
| C1H3g12179 | 3:3,812,565-3,813,548 | - | C2H3g00824 | CX3g030128 | LOC_Os03g08500 | Os03g0183300 | - | Detail |
| C1H3g30663 | 3:3,819,829-3,820,478 | - | C2H3g15819 | CX3g025492 | LOC_Os03g08520 | Os03g0183500 | OsFLZ10 | Detail |
| C1H3g23856 | 3:3,825,399-3,829,119 | - | C2H3g03642 | CX3g025720 | LOC_Os03g08530 | Os03g0183600 | - | Detail |
| C1H3g10815 | 3:3,832,544-3,833,347 | + | C2H3g13760 | CX3g029852 | LOC_Os03g08540 | - | - | Detail |
| C1H3g04182 | 3:3,836,467-3,842,289 | + | C2H3g04585 | CX3g027473 | LOC_Os03g08550 | Os03g0183800 | - | Detail |
| C1H3g04928 | 3:3,842,419-3,847,540 | - | C2H3g01686 | CX3g025762 | LOC_Os03g08560 | Os03g0183900 | - | Detail |
| C1H3g17401 | 3:3,848,469-3,854,711 | + | C2H3g25647 | CX3g029574 | LOC_Os03g08570 | Os03g0184000 | OsPDS | Detail |
| C1H3g08309 | 3:3,857,455-3,859,933 | + | C2H3g01940 | CX3g027873 | LOC_Os03g08580 | Os03g0184100 | - | Detail |
| C1H3g03640 | 3:3,868,091-3,873,683 | + | C2H3g15817 | CX3g027355 | LOC_Os03g08600 | Os03g0184300 | - | Detail |
| C1H3g13079 | 3:3,878,027-3,880,825 | + | C2H3g27030 | CX3g026692 | LOC_Os03g08610 | Os03g0184400 | - | Detail |
| C1H3g25725 | 3:3,881,446-3,883,046 | - | C2H3g00042 | CX3g031066 | LOC_Os03g08620 | Os03g0184500 | - | Detail |
| C1H3g19327 | 3:3,884,455-3,886,321 | + | C2H3g00164 | CX3g030436 | LOC_Os03g08624 | Os03g0184550 | - | Detail |
| C1H3g17870 | 3:3,890,192-3,892,381 | + | C2H3g00164 | CX3g025220 | LOC_Os03g08630 | Os03g0184600 | - | Detail |
| C1H3g06804 | 3:3,892,956-3,894,987 | - | C2H3g20986 | CX3g028169 | LOC_Os03g08640 | Os03g0184700 | OsORC2 | Detail |
| C1H3g20941 | 3:3,896,250-3,897,694 | - | - | CX3g031060 | - | Os04g0581502 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g055247 | 9:17,574,210-17,574,688 | - | C1H9g20303 | C2H9g09976 | LOC_Os09g34850 | Os09g0520100 | - | Detail |
| CX9g055700 | 9:17,578,386-17,582,082 | + | C1H9g03744 | C2H9g00711 | LOC_Os09g34860 | Os09g0520200 | - | Detail |
| CX9g057087 | 9:17,583,228-17,585,123 | + | C1H9g28676 | C2H9g12996 | LOC_Os09g34870 | Os09g0520300 | - | Detail |
| CX9g057384 | 9:17,587,782-17,591,212 | + | C1H9g02310 | C2H9g21344 | LOC_Os09g34880 | Os09g0520400 | OsbZIP76 | Detail |
| CX9g055638 | 9:17,592,106-17,593,024 | - | C1H9g04530 | C2H9g01771 | LOC_Os09g34890 | Os09g0520500 | - | Detail |
| CX9g056986 | 9:17,598,595-17,599,998 | + | C1H9g24828 | C2H9g21190 | LOC_Os09g32780 | - | - | Detail |
| CX9g055686 | 9:17,603,068-17,605,898 | - | C1H9g25767 | C2H9g04653 | LOC_Os09g34900 | Os09g0520600 | - | Detail |
| CX9g058165 | 9:17,608,176-17,612,394 | + | C1H9g15041 | C2H9g24414 | LOC_Os09g34910 | Os09g0520700 | - | Detail |
| CX9g057097 | 9:17,614,537-17,616,210 | - | C1H9g08027 | C2H9g26435 | LOC_Os09g34920 | Os09g0520800 | - | Detail |
| CX9g056068 | 9:17,622,120-17,623,734 | + | C1H9g02380 | C2H9g20646 | LOC_Os09g34930 | Os09g0521100 | - | Detail |
| CX9g056653 | 9:17,629,141-17,629,855 | - | - | - | - | - | - | Detail |
| CX9g057233 | 9:17,632,784-17,636,071 | + | C1H9g10520 | C2H9g14810 | LOC_Os09g34960 | Os09g0521400 | - | Detail |
| CX9g055738 | 9:17,637,480-17,640,560 | - | C1H9g25845 | C2H9g26372 | LOC_Os09g34970 | Os09g0521500 | - | Detail |
| CX9g056886 | 9:17,642,506-17,646,694 | - | C1H9g12508 | C2H9g23293 | LOC_Os09g34990 | Os09g0521800 | - | Detail |
| CX9g058042 | 9:17,649,255-17,653,047 | + | C1H9g22775 | C2H9g12959 | LOC_Os09g35000 | Os09g0521900 | RAD, OsGEN1, rad, rad*, OsRAD, GEN1, OsGEN-L | Detail |
| CX9g056315 | 9:17,654,916-17,655,584 | - | C1H9g14501 | C2H9g15745 | LOC_Os09g35010 | Os09g0522000 | OsDREB1B | Detail |
| CX9g057270 | 9:17,658,490-17,659,230 | - | C1H9g18822 | C2H9g10409 | LOC_Os09g35020 | Os09g0522100 | - | Detail |
| CX9g055958 | 9:17,662,880-17,663,629 | - | C1H9g24368 | C2H9g10409 | LOC_Os09g35030 | Os09g0522200 | OsDREB1A | Detail |
| CX9g058114 | 9:17,673,838-17,674,503 | + | C1H9g26152 | C2H9g20787 | LOC_Os09g26420 | Os09g0434500 | - | Detail |
| CX9g055483 | 9:17,696,246-17,696,464 | + | - | - | - | - | - | Detail |