| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g24558 | 3:215,422-216,951 | + | C2H3g00666 | CX3g025803 | - | Os03g0103400 | - | Detail |
| C1H3g28077 | 3:226,654-228,073 | + | C2H3g07381 | CX3g025211 | LOC_Os03g01530 | Os03g0105600 | - | Detail |
| C1H3g23454 | 3:230,958-233,218 | - | C2H3g12984 | CX3g026334 | LOC_Os03g01540 | Os03g0105700 | OsAHL6 | Detail |
| C1H3g02722 | 3:234,782-238,690 | - | C2H3g00326 | CX3g030126 | LOC_Os03g01550 | Os03g0105800 | - | Detail |
| C1H3g03839 | 3:242,866-245,726 | - | C2H3g00355 | CX3g030694 | LOC_Os03g01570 | Os03g0106000 | - | Detail |
| C1H3g18280 | 3:247,522-252,767 | - | C2H3g00823 | CX3g029689 | LOC_Os03g01580 | Os03g0106200 | - | Detail |
| C1H3g03593 | 3:256,281-260,330 | - | C2H3g10053 | CX3g031070 | LOC_Os03g01590 | Os03g0106300 | PAIR1, Pair1 | Detail |
| C1H3g13137 | 3:260,921-265,419 | - | C2H3g14376 | CX3g025678 | LOC_Os03g01600 | Os03g0106400 | OsBCAT1 | Detail |
| C1H3g09448 | 3:273,006-273,809 | + | C2H3g19859 | CX3g025368 | LOC_Os03g01650 | Os03g0106500 | - | Detail |
| C1H3g20839 | 3:275,633-275,947 | + | C2H3g20988 | - | - | Os03g0106550 | - | Detail |
| C1H3g28471 | 3:278,533-279,336 | + | C2H3g29856 | CX3g030913 | LOC_Os03g01610 | Os03g0106900 | - | Detail |
| C1H3g09211 | 3:284,012-284,815 | + | C2H3g24000 | CX3g029182 | LOC_Os03g01640 | Os03g0106800 | - | Detail |
| C1H3g27934 | 3:287,197-288,000 | - | C2H3g19859 | CX3g029495 | LOC_Os03g01610 | Os03g0106900 | - | Detail |
| C1H3g02983 | 3:291,849-295,865 | - | C2H3g18319 | CX3g030834 | LOC_Os03g01660 | Os03g0107000 | - | Detail |
| C1H3g17953 | 3:297,610-299,591 | + | C2H3g12781 | CX3g025562 | LOC_Os03g01670 | Os03g0107100 | - | Detail |
| C1H3g31596 | 3:299,600-304,440 | + | C2H3g12928 | CX3g025562 | LOC_Os03g01670 | Os03g0107100 | - | Detail |
| C1H3g21747 | 3:306,940-308,391 | - | C2H3g02258 | CX3g026726 | LOC_Os03g01700 | Os03g0107300 | LSI2, Lsi2, SIET1, OsLsi2 | Detail |
| C1H3g27800 | 3:315,445-323,364 | + | C2H3g07101 | CX3g025905 | LOC_Os03g01710 | Os03g0107400 | - | Detail |
| C1H3g21135 | 3:327,587-331,824 | + | C2H3g28769 | CX3g028047 | LOC_Os03g01720 | Os03g0254900 | - | Detail |
| C1H3g04149 | 3:333,332-334,179 | + | C2H3g28769 | CX3g030693 | LOC_Os03g01720 | Os03g0107500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g055459 | 9:17,313,391-17,316,974 | + | C1H9g00442 | C2H9g01458 | LOC_Os09g33970 | Os09g0514900 | - | Detail |
| CX9g056398 | 9:17,319,934-17,326,019 | + | - | C2H9g03851 | LOC_Os09g33980 | Os09g0515100 | - | Detail |
| CX9g056692 | 9:17,326,882-17,329,050 | - | C1H9g29441 | C2H9g20174 | LOC_Os09g33986 | Os09g0515200 | - | Detail |
| CX9g055699 | 9:17,331,640-17,334,345 | - | C1H9g06953 | C2H9g06626 | LOC_Os09g33992 | Os09g0515300 | - | Detail |
| CX9g056111 | 9:17,335,719-17,337,140 | + | C1H9g14320 | C2H9g14100 | LOC_Os09g34000 | Os09g0515400 | - | Detail |
| CX9g057904 | 9:17,338,759-17,342,692 | + | C1H9g08780 | C2H9g05230 | LOC_Os09g34010 | Os09g0515500 | - | Detail |
| CX9g057853 | 9:17,343,503-17,343,754 | - | C1H9g19159 | - | LOC_Os09g34020 | Os09g0515550 | - | Detail |
| CX9g056978 | 9:17,347,125-17,350,448 | - | C1H9g05485 | C2H9g27279 | LOC_Os09g34040 | Os09g0515800 | - | Detail |
| CX9g054929 | 9:17,353,853-17,354,946 | + | C1H9g27580 | C2H9g04711 | LOC_Os09g34050 | - | - | Detail |
| CX9g055645 | 9:17,355,490-17,355,992 | + | - | - | - | - | - | Detail |
| CX9g058005 | 9:17,357,491-17,361,005 | - | C1H9g27552 | C2H9g12799 | LOC_Os09g34060 | Os09g0516200 | RF2A, RF2a, OsbZIP75 | Detail |
| CX9g056074 | 9:17,367,683-17,371,740 | - | C1H9g04624 | C2H9g03877 | LOC_Os09g34070 | Os09g0516300 | OsRRMh | Detail |
| CX9g055114 | 9:17,373,431-17,377,216 | - | C1H9g20602 | C2H9g11431 | LOC_Os09g34090 | Os09g0516500 | - | Detail |
| CX9g055424 | 9:17,378,354-17,382,762 | - | C1H9g24868 | C2H9g10691 | LOC_Os09g34100 | Os09g0516600 | - | Detail |
| CX9g057318 | 9:17,384,056-17,388,518 | - | C1H9g10392 | C2H9g29370 | LOC_Os09g34110 | Os09g0516700 | - | Detail |
| CX9g056340 | 9:17,405,077-17,405,911 | + | C1H9g04774 | C2H9g01227 | LOC_Os09g34120 | Os09g0516800 | - | Detail |
| CX9g055630 | 9:17,406,840-17,413,479 | - | C1H9g21496 | C2H9g04309 | LOC_Os09g34130 | Os09g0516900 | - | Detail |
| CX9g055207 | 9:17,416,453-17,416,902 | + | C1H9g24686 | C2H9g23647 | LOC_Os09g34140 | Os09g0517000 | - | Detail |
| CX9g056714 | 9:17,417,867-17,421,965 | - | C1H9g31842 | C2H9g23722 | LOC_Os09g34150 | Os09g0517100 | - | Detail |
| CX9g056407 | 9:17,425,112-17,429,886 | - | C1H9g07747 | C2H9g00445 | LOC_Os09g34160 | Os09g0517100 | - | Detail |