| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08748 | 3:4,317,267-4,318,514 | - | C2H3g25674 | CX3g026299 | LOC_Os03g09850 | Os03g0194300 | - | Detail |
| C1H3g06307 | 3:4,318,899-4,323,842 | - | C2H3g24777 | CX3g029479 | LOC_Os03g14600 | Os03g0822100 | - | Detail |
| C1H3g08609 | 3:4,327,251-4,329,205 | + | C2H3g25314 | CX3g025342 | LOC_Os03g09860 | Os03g0194400 | - | Detail |
| C1H3g26915 | 3:4,329,951-4,332,300 | + | C2H3g01850 | CX3g029454 | LOC_Os03g09870 | Os03g0194500 | - | Detail |
| C1H3g23931 | 3:4,333,979-4,334,563 | + | C2H3g10528 | CX3g027093 | LOC_Os03g09880 | Os03g0194600 | - | Detail |
| C1H3g18007 | 3:4,335,481-4,336,334 | - | C2H3g10333 | - | - | - | - | Detail |
| C1H3g25501 | 3:4,342,515-4,344,762 | + | C2H3g02717 | CX3g027004 | LOC_Os03g09900 | Os03g0194900 | - | Detail |
| C1H3g25063 | 3:4,354,789-4,359,262 | + | C2H3g11804 | CX3g028012 | LOC_Os03g09910 | Os03g0195100 | OsALD1 | Detail |
| C1H3g19160 | 3:4,359,789-4,363,478 | - | C2H3g05380 | CX3g030407 | LOC_Os03g09920 | Os03g0195200 | - | Detail |
| C1H3g06347 | 3:4,364,408-4,368,483 | - | C2H3g24496 | CX3g025617 | LOC_Os03g09930 | Os03g0195300 | - | Detail |
| C1H3g05383 | 3:4,371,869-4,376,917 | - | C2H3g09781 | CX3g025665 | LOC_Os03g09940 | Os03g0195450 | - | Detail |
| C1H3g00202 | 3:4,374,196-4,375,756 | + | - | - | - | Os03g0195475 | - | Detail |
| C1H3g25788 | 3:4,378,862-4,380,038 | + | - | CX3g030787 | - | - | - | Detail |
| C1H3g21097 | 3:4,396,054-4,396,413 | + | C2H3g05423 | CX3g030854 | LOC_Os03g09970 | Os03g0195800 | - | Detail |
| C1H3g03606 | 3:4,396,700-4,399,771 | + | C2H3g05423 | CX3g030854 | LOC_Os03g09970 | Os03g0195800 | - | Detail |
| C1H3g03766 | 3:4,400,367-4,400,699 | - | C2H3g02477 | - | - | - | - | Detail |
| C1H3g10488 | 3:4,404,725-4,408,629 | + | C2H3g12869 | CX3g026812 | LOC_Os03g09980 | Os03g0196000 | - | Detail |
| C1H3g16837 | 3:4,411,823-4,412,239 | - | C2H3g07370 | CX3g026017 | - | Os03g0196250 | - | Detail |
| C1H3g12862 | 3:4,428,635-4,434,023 | + | C2H3g22370 | CX3g027746 | LOC_Os03g10030 | Os03g0196400 | - | Detail |
| C1H3g19849 | 3:4,438,240-4,438,680 | - | C2H3g27922 | - | - | Os03g0196450 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g057776 | 9:16,902,402-16,910,031 | + | C1H9g02458 | C2H9g05876 | LOC_Os09g32930 | Os09g0506800 | PAIR2 | Detail |
| CX9g055241 | 9:16,911,509-16,911,679 | + | - | - | - | - | - | Detail |
| CX9g055013 | 9:16,912,691-16,915,326 | + | C1H9g22232 | C2H9g29007 | LOC_Os09g32940 | Os09g0506900 | - | Detail |
| CX9g055016 | 9:16,925,502-16,926,003 | + | - | - | - | - | - | Detail |
| CX9g055627 | 9:16,937,483-16,942,236 | + | C1H9g22572 | C2H9g16087 | LOC_Os09g32944 | Os09g0507100 | OsSPL18 | Detail |
| CX9g055231 | 9:16,947,087-16,947,520 | - | - | - | - | - | - | Detail |
| CX9g055656 | 9:16,950,714-16,956,741 | + | C1H9g01976 | C2H9g24094 | LOC_Os09g32948 | Os09g0507200 | OsMADS8, OsMADS8/24, DTE9 | Detail |
| CX9g056723 | 9:16,959,075-16,961,232 | + | C1H9g31066 | C2H9g09810 | LOC_Os09g32952 | Os09g0507300 | OsAAO5 | Detail |
| CX9g056857 | 9:16,968,363-16,968,680 | + | C1H9g29777 | C2H9g27580 | LOC_Os09g32960 | Os09g0507400 | - | Detail |
| CX9g058089 | 9:16,971,528-16,973,787 | - | C1H9g05594 | C2H9g28610 | LOC_Os09g32964 | Os09g0507500 | - | Detail |
| CX9g056931 | 9:16,975,423-16,976,772 | - | C1H9g16500 | C2H9g13596 | LOC_Os09g32968 | Os09g0507600 | - | Detail |
| CX9g056180 | 9:16,978,457-16,980,456 | - | C1H9g04875 | C2H9g15981 | LOC_Os09g32976 | Os09g0507800 | - | Detail |
| CX9g057008 | 9:16,985,410-16,985,886 | + | - | - | - | Os09g0508000 | - | Detail |
| CX9g056378 | 9:16,988,762-16,990,684 | - | C1H9g11387 | C2H9g02236 | LOC_Os09g32988 | Os09g0508200 | - | Detail |
| CX9g057787 | 9:16,991,609-16,995,545 | - | C1H9g14135 | C2H9g17381 | LOC_Os08g42350 | Os09g0508250 | - | Detail |
| CX9g057936 | 9:16,997,049-16,998,886 | - | C1H9g15525 | C2H9g06782 | LOC_Os09g33450 | Os09g0508300 | - | Detail |
| CX9g056507 | 9:17,005,108-17,006,363 | + | C1H9g29300 | C2H9g16760 | LOC_Os09g33460 | Os09g0508500 | - | Detail |
| CX9g057215 | 9:17,010,106-17,010,303 | + | - | - | - | - | - | Detail |
| CX9g056196 | 9:17,011,610-17,011,783 | - | - | - | - | - | - | Detail |
| CX9g056683 | 9:17,021,393-17,022,838 | - | C1H9g31398 | C2H9g18629 | LOC_Os09g30980 | Os09g0482900 | - | Detail |