| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g20617 | 3:29,621,352-29,624,320 | - | C1H3g23563 | CX3g025581 | LOC_Os03g56790 | Os03g0780400 | OsADF2 | Detail |
| C2H3g18001 | 3:29,626,391-29,631,401 | + | C1H3g23600 | CX3g026219 | LOC_Os03g56800 | Os03g0780500 | - | Detail |
| C2H3g14864 | 3:29,631,995-29,635,002 | + | C1H3g17595 | CX3g030860 | LOC_Os03g56810 | Os03g0780600 | - | Detail |
| C2H3g09626 | 3:29,635,110-29,639,573 | + | - | - | - | - | - | Detail |
| C2H3g16433 | 3:29,641,852-29,643,226 | + | C1H3g26439 | CX3g026170 | LOC_Os03g56820 | Os03g0780800 | - | Detail |
| C2H3g03306 | 3:29,644,727-29,647,250 | - | C1H3g14922 | CX3g028624 | LOC_Os03g56830 | Os03g0780900 | - | Detail |
| C2H3g10423 | 3:29,649,468-29,652,876 | - | C1H3g04528 | CX3g030035 | LOC_Os03g56840 | Os03g0781000 | - | Detail |
| C2H3g00662 | 3:29,654,033-29,656,588 | + | C1H3g00697 | CX3g028006 | LOC_Os03g56850 | Os03g0781100 | - | Detail |
| C2H3g16006 | 3:29,658,702-29,659,389 | - | C1H3g00675 | CX3g031346 | LOC_Os03g56860 | Os03g0781300 | - | Detail |
| C2H3g09130 | 3:29,660,283-29,662,126 | - | C1H3g13066 | CX3g029784 | LOC_Os03g56869 | Os03g0781400 | - | Detail |
| C2H3g00286 | 3:29,664,701-29,668,083 | - | C1H3g04826 | CX3g025012 | LOC_Os03g56890 | Os03g0781600 | - | Detail |
| C2H3g19846 | 3:29,687,604-29,690,478 | + | C1H3g18147 | CX3g026212 | LOC_Os03g56950 | Os03g0782500 | PIL13, OsPIL1, OsPIL13, OsbHLH152 | Detail |
| C2H3g26278 | 3:29,697,094-29,699,728 | - | C1H3g10536 | CX3g026808 | LOC_Os03g56960 | Os03g0782900 | - | Detail |
| C2H3g17813 | 3:29,699,849-29,705,182 | + | C1H3g29435 | CX3g030659 | LOC_Os03g56970 | Os03g0783000 | - | Detail |
| C2H3g21267 | 3:29,717,486-29,720,085 | + | C1H3g09935 | - | LOC_Os03g56490 | Os03g0783100 | - | Detail |
| C2H3g27771 | 3:29,721,321-29,721,893 | + | C1H3g22666 | - | LOC_Os03g57010 | Os03g0783100 | - | Detail |
| C2H3g11026 | 3:29,763,753-29,765,490 | - | C1H3g16399 | CX3g026130 | LOC_Os03g57040 | Os03g0783700 | - | Detail |
| C2H3g20647 | 3:29,771,887-29,775,333 | + | C1H3g28995 | CX3g025168 | LOC_Os03g57070 | Os03g0784000 | - | Detail |
| C2H3g12289 | 3:29,780,651-29,782,256 | - | C1H3g19825 | CX3g027646 | LOC_Os03g57080 | Os03g0784100 | - | Detail |
| C2H3g18782 | 3:29,791,176-29,793,796 | - | C1H3g16412 | - | LOC_Os03g57090 | Os03g0784300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g055341 | 9:16,752,629-16,758,890 | - | C1H9g19163 | C2H9g09324 | LOC_Os09g32580 | Os09g0502800 | - | Detail |
| CX9g055636 | 9:16,767,078-16,768,412 | + | C1H9g27895 | C2H9g03067 | LOC_Os09g32620 | Os09g0503000 | - | Detail |
| CX9g058014 | 9:16,770,719-16,773,208 | + | C1H9g22567 | C2H9g26652 | LOC_Os09g32640 | Os09g0503100 | - | Detail |
| CX9g055869 | 9:16,775,584-16,778,871 | + | C1H9g12902 | C2H9g20718 | LOC_Os09g32650 | Os09g0503400 | - | Detail |
| CX9g055931 | 9:16,800,659-16,802,206 | + | - | - | - | - | - | Detail |
| CX9g057796 | 9:16,810,683-16,810,919 | - | - | - | - | - | - | Detail |
| CX9g056666 | 9:16,812,857-16,816,698 | + | C1H9g15461 | C2H9g28585 | LOC_Os09g32680 | Os09g0504400 | OsCycC | Detail |
| CX9g055615 | 9:16,819,048-16,820,060 | - | C1H9g24869 | C2H9g18502 | LOC_Os09g32690 | Os09g0504700 | - | Detail |
| CX9g055065 | 9:16,821,176-16,822,970 | + | C1H9g01645 | C2H9g07035 | LOC_Os09g32700 | Os09g0504800 | - | Detail |
| CX9g057729 | 9:16,823,589-16,826,632 | - | C1H9g24207 | C2H9g25198 | LOC_Os09g32710 | Os09g0504900 | - | Detail |
| CX9g056602 | 9:16,830,983-16,831,615 | - | C1H9g05583 | - | LOC_Os09g32730 | Os09g0505000 | - | Detail |
| CX9g056102 | 9:16,834,028-16,838,604 | - | C1H9g18162 | C2H9g10527 | LOC_Os09g32740 | Os09g0505100 | OsLMP1 | Detail |
| CX9g056649 | 9:16,846,852-16,850,416 | + | C1H9g22641 | C2H9g09607 | LOC_Os09g32750 | Os09g0505200 | - | Detail |
| CX9g055713 | 9:16,851,931-16,855,239 | - | C1H9g03482 | C2H9g21366 | LOC_Os09g32760 | Os09g0505300 | - | Detail |
| CX9g056695 | 9:16,859,135-16,861,786 | - | C1H9g24687 | C2H9g12699 | LOC_Os09g32770 | Os09g0505400 | - | Detail |
| CX9g056682 | 9:16,865,216-16,868,293 | + | C1H9g26041 | C2H9g11822 | LOC_Os09g32800 | Os09g0505600 | - | Detail |
| CX9g057981 | 9:16,871,239-16,873,574 | + | - | C2H9g18360 | LOC_Os09g32810 | Os09g0505700 | - | Detail |
| CX9g056458 | 9:16,874,860-16,879,886 | + | C1H9g21392 | C2H9g24671 | LOC_Os09g32820 | Os09g0505800 | - | Detail |
| CX9g057123 | 9:16,882,068-16,885,576 | + | C1H9g14148 | C2H9g08120 | LOC_Os09g32830 | Os09g0505900 | - | Detail |
| CX9g056383 | 9:16,886,160-16,890,358 | - | C1H9g17584 | C2H9g17089 | LOC_Os09g32840 | Os09g0506000 | - | Detail |