| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04729 | 3:4,611,926-4,613,460 | - | C2H3g24222 | CX3g030929 | LOC_Os03g10210 | Os03g0198600 | HOX12, Oshox12, OsHox12, GT1 | Detail |
| C1H3g24941 | 3:4,626,118-4,626,506 | + | C2H3g01513 | - | - | - | - | Detail |
| C1H3g23090 | 3:4,634,713-4,636,287 | - | C2H3g16295 | CX3g026889 | LOC_Os03g10220 | - | - | Detail |
| C1H3g13438 | 3:4,637,520-4,640,553 | - | C2H3g19804 | CX3g026154 | LOC_Os03g10224 | Os03g0198900 | - | Detail |
| C1H3g16749 | 3:4,640,745-4,645,102 | + | C2H3g09522 | CX3g028745 | LOC_Os03g10230 | Os03g0199000 | - | Detail |
| C1H3g12272 | 3:4,650,035-4,651,210 | + | C2H3g01585 | CX3g029096 | LOC_Os03g10240 | Os03g0199100 | - | Detail |
| C1H3g00274 | 3:4,660,923-4,662,003 | - | C2H3g23420 | CX3g031305 | LOC_Os03g10260 | Os03g0199500 | - | Detail |
| C1H3g07008 | 3:4,678,681-4,679,923 | + | C2H3g26891 | CX3g025392 | LOC_Os03g10300 | Os03g0200000 | - | Detail |
| C1H3g12286 | 3:4,687,802-4,689,563 | + | C2H3g01636 | CX3g029912 | LOC_Os03g10320 | Os03g0200200 | - | Detail |
| C1H3g29696 | 3:4,695,612-4,696,359 | + | C2H3g23926 | CX3g028962 | - | - | - | Detail |
| C1H3g13020 | 3:4,697,511-4,699,802 | + | C2H3g07176 | CX3g025427 | LOC_Os03g10340 | Os03g0200500 | - | Detail |
| C1H3g29298 | 3:4,699,933-4,704,069 | - | C2H3g17766 | CX3g027963 | LOC_Os03g10350 | Os03g0200600 | OsTPR075 | Detail |
| C1H3g01933 | 3:4,707,172-4,710,106 | - | C2H3g08890 | CX3g025362 | LOC_Os03g10360 | Os03g0200700 | - | Detail |
| C1H3g30301 | 3:4,711,278-4,713,578 | - | C2H3g09465 | CX3g031231 | LOC_Os03g10370 | Os03g0200800 | - | Detail |
| C1H3g28372 | 3:4,717,317-4,719,594 | + | C2H3g19650 | CX3g028366 | LOC_Os03g10390 | Os03g0201000 | - | Detail |
| C1H3g07769 | 3:4,719,979-4,724,128 | - | C2H3g21201 | CX3g026809 | LOC_Os03g10400 | Os03g0201100 | - | Detail |
| C1H3g03267 | 3:4,724,286-4,726,332 | + | C2H3g08749 | - | LOC_Os03g10410 | Os03g0201200 | - | Detail |
| C1H3g26783 | 3:4,726,856-4,729,237 | + | C2H3g27980 | CX3g027641 | LOC_Os03g10420 | Os03g0201400 | - | Detail |
| C1H3g14289 | 3:4,739,963-4,742,807 | + | C2H3g05108 | CX3g026129 | LOC_Os03g10440 | Os03g0201500 | OsMORE1a | Detail |
| C1H3g07517 | 3:4,743,790-4,746,012 | - | C2H3g04674 | CX3g029780 | LOC_Os03g10450 | Os03g0201600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g055341 | 9:16,752,629-16,758,890 | - | C1H9g19163 | C2H9g09324 | LOC_Os09g32580 | Os09g0502800 | - | Detail |
| CX9g055636 | 9:16,767,078-16,768,412 | + | C1H9g27895 | C2H9g03067 | LOC_Os09g32620 | Os09g0503000 | - | Detail |
| CX9g058014 | 9:16,770,719-16,773,208 | + | C1H9g22567 | C2H9g26652 | LOC_Os09g32640 | Os09g0503100 | - | Detail |
| CX9g055869 | 9:16,775,584-16,778,871 | + | C1H9g12902 | C2H9g20718 | LOC_Os09g32650 | Os09g0503400 | - | Detail |
| CX9g055931 | 9:16,800,659-16,802,206 | + | - | - | - | - | - | Detail |
| CX9g057796 | 9:16,810,683-16,810,919 | - | - | - | - | - | - | Detail |
| CX9g056666 | 9:16,812,857-16,816,698 | + | C1H9g15461 | C2H9g28585 | LOC_Os09g32680 | Os09g0504400 | OsCycC | Detail |
| CX9g055615 | 9:16,819,048-16,820,060 | - | C1H9g24869 | C2H9g18502 | LOC_Os09g32690 | Os09g0504700 | - | Detail |
| CX9g055065 | 9:16,821,176-16,822,970 | + | C1H9g01645 | C2H9g07035 | LOC_Os09g32700 | Os09g0504800 | - | Detail |
| CX9g057729 | 9:16,823,589-16,826,632 | - | C1H9g24207 | C2H9g25198 | LOC_Os09g32710 | Os09g0504900 | - | Detail |
| CX9g056602 | 9:16,830,983-16,831,615 | - | C1H9g05583 | - | LOC_Os09g32730 | Os09g0505000 | - | Detail |
| CX9g056102 | 9:16,834,028-16,838,604 | - | C1H9g18162 | C2H9g10527 | LOC_Os09g32740 | Os09g0505100 | OsLMP1 | Detail |
| CX9g056649 | 9:16,846,852-16,850,416 | + | C1H9g22641 | C2H9g09607 | LOC_Os09g32750 | Os09g0505200 | - | Detail |
| CX9g055713 | 9:16,851,931-16,855,239 | - | C1H9g03482 | C2H9g21366 | LOC_Os09g32760 | Os09g0505300 | - | Detail |
| CX9g056695 | 9:16,859,135-16,861,786 | - | C1H9g24687 | C2H9g12699 | LOC_Os09g32770 | Os09g0505400 | - | Detail |
| CX9g056682 | 9:16,865,216-16,868,293 | + | C1H9g26041 | C2H9g11822 | LOC_Os09g32800 | Os09g0505600 | - | Detail |
| CX9g057981 | 9:16,871,239-16,873,574 | + | - | C2H9g18360 | LOC_Os09g32810 | Os09g0505700 | - | Detail |
| CX9g056458 | 9:16,874,860-16,879,886 | + | C1H9g21392 | C2H9g24671 | LOC_Os09g32820 | Os09g0505800 | - | Detail |
| CX9g057123 | 9:16,882,068-16,885,576 | + | C1H9g14148 | C2H9g08120 | LOC_Os09g32830 | Os09g0505900 | - | Detail |
| CX9g056383 | 9:16,886,160-16,890,358 | - | C1H9g17584 | C2H9g17089 | LOC_Os09g32840 | Os09g0506000 | - | Detail |