| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g24567 | 3:5,522,815-5,525,635 | + | C2H3g18755 | CX3g029021 | LOC_Os03g11760 | Os03g0216800 | - | Detail |
| C1H3g18611 | 3:5,529,479-5,534,259 | + | C2H3g21216 | CX3g025795 | LOC_Os03g11770 | Os03g0216900 | - | Detail |
| C1H3g15471 | 3:5,534,782-5,535,195 | - | C2H3g13077 | CX3g025145 | LOC_Os03g11780 | Os03g0217000 | - | Detail |
| C1H3g22547 | 3:5,538,443-5,541,767 | + | C2H3g01791 | CX3g026323 | LOC_Os03g11790 | Os03g0217200 | - | Detail |
| C1H3g25970 | 3:5,546,441-5,552,323 | + | C2H3g17874 | CX3g026533 | LOC_Os03g11890 | Os03g0218300 | - | Detail |
| C1H3g04450 | 3:5,552,712-5,556,996 | - | C2H3g10730 | CX3g031320 | LOC_Os03g11900 | Os03g0218400 | OsMST4 | Detail |
| C1H3g10632 | 3:5,562,561-5,565,745 | - | C2H3g22152 | CX3g030309 | LOC_Os03g11910 | Os03g0218500 | - | Detail |
| C1H3g06308 | 3:5,581,833-5,584,574 | + | C2H3g13924 | CX3g025032 | LOC_Os03g11950 | Os03g0219100 | OsSec14-26 | Detail |
| C1H3g24825 | 3:5,588,094-5,590,828 | - | C2H3g24481 | CX3g027163 | LOC_Os03g11960 | Os03g0219200 | OsCSD3 | Detail |
| C1H3g11590 | 3:5,591,311-5,595,077 | - | C2H3g03285 | CX3g028374 | LOC_Os03g11970 | Os03g0219300 | - | Detail |
| C1H3g20877 | 3:5,595,939-5,598,537 | - | C2H3g25818 | CX3g028318 | LOC_Os03g11980 | Os03g0219400 | - | Detail |
| C1H3g14036 | 3:5,599,980-5,601,479 | + | C2H3g26156 | CX3g029685 | LOC_Os03g11990 | Os03g0219500 | - | Detail |
| C1H3g26472 | 3:5,603,730-5,607,431 | - | C2H3g18310 | CX3g028368 | LOC_Os03g12000 | Os03g0219700 | - | Detail |
| C1H3g15777 | 3:5,608,891-5,613,075 | + | C2H3g00756 | CX3g026437 | LOC_Os03g12010 | Os03g0219800 | - | Detail |
| C1H3g13535 | 3:5,613,615-5,615,733 | + | C2H3g05450 | CX3g028610 | LOC_Os03g12020 | Os03g0219900 | - | Detail |
| C1H3g10915 | 3:5,621,207-5,623,354 | - | C2H3g23972 | CX3g026270 | LOC_Os03g12030 | Os03g0220100 | WSL4, CER6/CUT1, CER6, CUT1, OsCER6 | Detail |
| C1H3g01618 | 3:5,643,998-5,646,450 | + | C2H3g23561 | CX3g025137 | LOC_Os03g12110 | Os03g0221200 | - | Detail |
| C1H3g06610 | 3:5,647,019-5,654,607 | - | C2H3g25327 | CX3g025281 | LOC_Os03g12120 | Os03g0221300 | - | Detail |
| C1H3g09947 | 3:5,657,529-5,661,726 | + | C2H3g25299 | CX3g028100 | LOC_Os03g12140 | Os03g0221500 | - | Detail |
| C1H3g29297 | 3:5,664,798-5,667,335 | + | C2H3g19033 | CX3g026372 | LOC_Os03g12150 | Os03g0221700 | SDRLK-9 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g056866 | 9:16,628,147-16,629,867 | - | C1H9g07123 | C2H9g30289 | LOC_Os09g32330 | Os09g0499000 | SKIN1 | Detail |
| CX9g057294 | 9:16,639,676-16,639,849 | + | - | - | - | - | - | Detail |
| CX9g055693 | 9:16,653,625-16,654,746 | - | C1H9g27912 | - | LOC_Os09g32360 | Os09g0499400 | - | Detail |
| CX9g057337 | 9:16,656,705-16,658,852 | + | C1H9g27371 | - | LOC_Os09g32370 | Os09g0499500 | - | Detail |
| CX9g056637 | 9:16,659,783-16,663,011 | - | C1H9g11515 | C2H9g15486 | LOC_Os09g32380 | Os09g0499600 | - | Detail |
| CX9g055955 | 9:16,664,842-16,671,166 | - | C1H9g03497 | C2H9g30463 | LOC_Os09g32410 | Os09g0500100 | - | Detail |
| CX9g055770 | 9:16,671,662-16,672,165 | - | C1H9g18383 | - | - | Os09g0500151 | - | Detail |
| CX9g057000 | 9:16,674,488-16,677,150 | - | C1H9g08634 | C2H9g09805 | LOC_Os09g32430 | Os09g0500200 | - | Detail |
| CX9g056675 | 9:16,679,420-16,684,629 | + | C1H9g11307 | C2H9g15110 | LOC_Os09g32440 | Os09g0500300 | - | Detail |
| CX9g054850 | 9:16,685,658-16,693,477 | + | C1H9g04482 | C2H9g01534 | LOC_Os09g32450 | Os09g0500600 | - | Detail |
| CX9g057355 | 9:16,695,862-16,697,882 | - | C1H9g28494 | C2H9g04091 | LOC_Os09g32470 | Os09g0500900 | - | Detail |
| CX9g057555 | 9:16,704,469-16,705,263 | + | C1H9g04226 | C2H9g04091 | LOC_Os09g32470 | Os09g0501100 | - | Detail |
| CX9g056949 | 9:16,708,122-16,709,804 | + | C1H9g28322 | C2H9g21146 | LOC_Os09g32532 | Os09g0502000 | - | Detail |
| CX9g056092 | 9:16,715,829-16,717,581 | - | C1H9g06581 | C2H9g26241 | LOC_Os09g32510 | Os09g0501600 | OsbHLH92, Lam1 | Detail |
| CX9g057819 | 9:16,722,740-16,723,938 | - | C1H9g28322 | C2H9g30383 | LOC_Os09g32532 | Os09g0502000 | - | Detail |
| CX9g054899 | 9:16,725,043-16,727,335 | - | C1H9g00140 | C2H9g27344 | LOC_Os09g32526 | Os09g0501850 | - | Detail |
| CX9g055348 | 9:16,728,578-16,730,327 | - | C1H9g28322 | C2H9g30383 | LOC_Os09g32532 | Os09g0502000 | - | Detail |
| CX9g055824 | 9:16,733,557-16,739,117 | - | C1H9g08567 | C2H9g09975 | LOC_Os09g32540 | Os09g0502100 | LGD1, LGD1.6 | Detail |
| CX9g056540 | 9:16,742,603-16,747,075 | - | C1H9g16225 | C2H9g02889 | LOC_Os09g32550 | Os09g0502200 | - | Detail |
| CX9g054956 | 9:16,750,431-16,751,763 | + | C1H9g10007 | C2H9g24651 | LOC_Os09g32570 | Os09g0502500 | - | Detail |