| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g25691 | 3:9,462,289-9,465,500 | + | C2H3g16033 | CX3g029358 | LOC_Os03g19020 | Os03g0302200 | OsHIRP1 | Detail |
| C1H3g01186 | 3:9,471,237-9,472,085 | + | C2H3g22160 | CX3g025355 | LOC_Os03g19040 | Os03g0302500 | - | Detail |
| C1H3g04602 | 3:9,474,864-9,477,250 | + | C2H3g04749 | CX3g031208 | LOC_Os03g19059 | Os03g0302700 | - | Detail |
| C1H3g22154 | 3:9,479,142-9,479,789 | + | C2H3g01569 | CX3g027498 | LOC_Os03g19070 | Os03g0302800 | - | Detail |
| C1H3g20481 | 3:9,493,622-9,498,114 | + | C2H3g02069 | CX3g029770 | LOC_Os03g19080 | Os03g0302900 | SSD1 | Detail |
| C1H3g20097 | 3:9,501,969-9,503,042 | + | C2H3g07365 | CX3g030525 | LOC_Os03g19090 | Os03g0303100 | - | Detail |
| C1H3g25874 | 3:9,511,342-9,517,834 | - | C2H3g09593 | CX3g027281 | LOC_Os03g19120 | Os03g0303500 | OsP1 | Detail |
| C1H3g30781 | 3:9,538,145-9,538,965 | - | C2H3g00606 | CX3g028949 | LOC_Os03g19170 | Os03g0304100 | - | Detail |
| C1H3g08647 | 3:9,542,012-9,549,190 | + | C2H3g12534 | CX3g027589 | LOC_Os03g19190 | Os03g0304400 | - | Detail |
| C1H3g21470 | 3:9,562,466-9,565,948 | - | C2H3g09070 | CX3g026232 | LOC_Os03g19200 | Os03g0304500 | - | Detail |
| C1H3g06043 | 3:9,588,138-9,590,992 | - | C2H3g20134 | - | LOC_Os03g19220 | Os03g0304800 | - | Detail |
| C1H3g10550 | 3:9,600,828-9,604,939 | - | C2H3g11777 | CX3g026365 | LOC_Os03g19240 | Os03g0305000 | - | Detail |
| C1H3g05747 | 3:9,607,422-9,611,029 | - | C2H3g17079 | CX3g028640 | LOC_Os03g19250 | Os03g0305100 | - | Detail |
| C1H3g00125 | 3:9,615,615-9,616,253 | - | C2H3g13465 | CX3g029782 | LOC_Os03g19260 | Os03g0305200 | - | Detail |
| C1H3g18796 | 3:9,624,177-9,625,049 | - | C2H3g28502 | CX3g028201 | LOC_Os03g19270 | Os03g0305400 | OsUSP3 | Detail |
| C1H3g22639 | 3:9,627,619-9,632,059 | + | C2H3g12913 | CX3g030535 | LOC_Os03g19280 | Os03g0305500 | ASL1, OsASL1.2, OsASL1, OsAL1, red1 | Detail |
| C1H3g06291 | 3:9,633,050-9,634,190 | + | C2H3g24123 | CX3g026844 | LOC_Os03g19290 | Os03g0305600 | - | Detail |
| C1H3g09918 | 3:9,635,133-9,638,331 | + | C2H3g29234 | CX3g029447 | LOC_Os03g19300 | Os03g0305700 | - | Detail |
| C1H3g15276 | 3:9,638,602-9,640,053 | - | C2H3g25404 | CX3g025751 | LOC_Os03g19310 | Os03g0305800 | - | Detail |
| C1H3g04998 | 3:9,651,450-9,652,799 | + | C2H3g04492 | CX3g029664 | LOC_Os03g19330 | Os03g0306100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g058069 | 9:14,643,641-14,644,972 | + | C1H9g14335 | C2H9g23476 | LOC_Os09g27910 | Os09g0452400 | - | Detail |
| CX9g056047 | 9:14,649,249-14,650,616 | + | C1H9g26506 | C2H9g23476 | LOC_Os09g27940 | Os09g0452800 | - | Detail |
| CX9g056293 | 9:14,652,189-14,655,550 | - | C1H9g30352 | C2H9g03912 | LOC_Os09g27950 | Os09g0452900 | - | Detail |
| CX9g056150 | 9:14,659,641-14,661,751 | - | C1H9g28680 | C2H9g02612 | LOC_Os09g27960 | Os09g0453000 | - | Detail |
| CX9g056673 | 9:14,662,656-14,664,285 | + | C1H9g19635 | C2H9g04673 | LOC_Os09g27980 | Os09g0453200 | - | Detail |
| CX9g056708 | 9:14,664,573-14,665,955 | - | C1H9g20707 | C2H9g04521 | LOC_Os09g27990 | Os09g0453300 | - | Detail |
| CX9g057841 | 9:14,666,943-14,667,095 | + | - | - | - | - | - | Detail |
| CX9g055145 | 9:14,668,561-14,670,817 | - | C1H9g05527 | C2H9g02229 | LOC_Os09g28000 | Os09g0453400 | - | Detail |
| CX9g057106 | 9:14,673,470-14,678,258 | - | C1H9g19567 | C2H9g02526 | LOC_Os09g28019 | Os09g0453500 | - | Detail |
| CX9g057067 | 9:14,680,606-14,681,019 | - | - | - | LOC_Os09g36590 | - | - | Detail |
| CX9g056994 | 9:14,682,031-14,687,844 | - | C1H9g02119 | C2H9g18876 | LOC_Os09g28040 | Os09g0453700 | - | Detail |
| CX9g055414 | 9:14,695,736-14,699,995 | + | C1H9g13901 | C2H9g28821 | LOC_Os09g28050 | Os09g0453800 | - | Detail |
| CX9g057470 | 9:14,705,772-14,707,315 | - | C1H9g00481 | C2H9g28225 | LOC_Os09g28060 | Os09g0453900 | - | Detail |
| CX9g056919 | 9:14,714,771-14,717,895 | + | C1H9g19719 | C2H9g17318 | LOC_Os09g28100 | Os09g0454100 | - | Detail |
| CX9g057696 | 9:14,718,871-14,722,611 | - | C1H9g10992 | C2H9g11334 | LOC_Os09g28110 | Os09g0454200 | - | Detail |
| CX9g058006 | 9:14,727,807-14,729,398 | + | C1H9g00491 | C2H9g24563 | LOC_Os09g28120 | Os09g0454300 | - | Detail |
| CX9g056279 | 9:14,730,536-14,733,929 | - | C1H9g26159 | C2H9g07945 | LOC_Os09g28130 | Os09g0454500 | - | Detail |
| CX9g055863 | 9:14,735,517-14,737,660 | + | C1H9g31005 | C2H9g22728 | LOC_Os09g28160 | Os09g0454600 | - | Detail |
| CX9g055538 | 9:14,741,018-14,743,744 | - | C1H9g28705 | C2H9g16247 | LOC_Os09g28180 | Os09g0454900 | SDRLK-65 | Detail |
| CX9g056784 | 9:14,744,676-14,744,885 | - | - | - | - | - | - | Detail |