| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g22731 | 1:24,806,899-24,821,417 | - | C2H1g03816 | CX1g004904 | LOC_Os01g48680 | Os01g0678500 | TPC1, OsTPC1, Tpc1, OsCC1 | Detail |
| C1H1g06484 | 1:24,822,645-24,824,648 | + | C2H1g17432 | CX1g001832 | LOC_Os01g48690 | Os01g0678600 | - | Detail |
| C1H1g21202 | 1:24,825,534-24,828,516 | - | C2H1g29587 | CX1g005378 | LOC_Os01g48700 | Os01g0678700 | - | Detail |
| C1H1g29809 | 1:24,831,421-24,834,882 | + | C2H1g22453 | CX1g000800 | - | - | - | Detail |
| C1H1g09148 | 1:24,836,776-24,837,408 | - | C2H1g18621 | CX1g006182 | LOC_Os01g48710 | Os01g0678800 | - | Detail |
| C1H1g01369 | 1:24,845,874-24,854,466 | + | C2H1g02873 | CX1g006519 | LOC_Os01g48720 | Os01g0679000 | - | Detail |
| C1H1g15834 | 1:24,862,555-24,939,365 | - | C2H1g22016 | CX1g002522 | LOC_Os01g48830 | Os01g0680700 | - | Detail |
| C1H1g09308 | 1:24,863,371-24,867,936 | + | C2H1g10975 | CX1g004313 | LOC_Os01g48750 | Os01g0679550 | - | Detail |
| C1H1g00895 | 1:24,869,571-24,872,932 | + | C2H1g25010 | CX1g003619 | LOC_Os01g48760 | Os01g0679600 | - | Detail |
| C1H1g15404 | 1:24,886,940-24,893,719 | + | C2H1g01242 | CX1g003718 | LOC_Os01g48790 | Os01g0679900 | - | Detail |
| C1H1g14743 | 1:24,904,493-24,905,653 | + | C2H1g18628 | CX1g004327 | LOC_Os01g48800 | Os01g0680200 | OsPUP4, BG3/OsPUP4, BG3 | Detail |
| C1H1g08166 | 1:24,917,950-24,920,122 | + | C2H1g09841 | CX1g006918 | LOC_Os01g48810 | Os01g0680400 | - | Detail |
| C1H1g07424 | 1:24,925,640-24,926,551 | + | C2H1g14175 | CX1g002655 | LOC_Os01g48820 | Os01g0680600 | - | Detail |
| C1H1g07492 | 1:24,931,644-24,932,133 | + | - | - | - | Os01g0680650 | - | Detail |
| C1H1g17992 | 1:24,948,315-24,950,911 | - | C2H1g29263 | CX1g007143 | LOC_Os01g48850 | Os01g0680900 | - | Detail |
| C1H1g20689 | 1:24,952,547-24,958,250 | - | C2H1g05013 | CX1g002388 | LOC_Os01g48874 | Os01g0681000 | - | Detail |
| C1H1g14533 | 1:24,963,599-24,966,274 | + | C2H1g17133 | CX1g001461 | LOC_Os01g48900 | Os01g0681100 | - | Detail |
| C1H1g07251 | 1:24,966,702-24,969,016 | + | C2H1g07127 | CX1g001461 | LOC_Os01g48900 | Os05g0556100 | - | Detail |
| C1H1g21340 | 1:24,970,459-24,975,608 | - | C2H1g13127 | CX1g007055 | LOC_Os01g48910 | Os01g0681200 | - | Detail |
| C1H1g18369 | 1:24,978,777-24,984,105 | - | C2H1g29187 | CX1g000478 | LOC_Os01g48920 | Os01g0681400 | ATG6A, OsATG6a | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g055972 | 9:14,480,389-14,482,167 | + | C1H9g31490 | C2H9g17309 | LOC_Os09g27590 | Os09g0448500 | GS9 | Detail |
| CX9g056032 | 9:14,494,500-14,498,029 | + | C1H9g23054 | C2H9g13055 | LOC_Os09g27610 | Os09g0448900 | - | Detail |
| CX9g057956 | 9:14,499,421-14,501,671 | + | C1H9g27006 | C2H9g00544 | LOC_Os09g27620 | Os09g0449000 | OsMS1, PTC1 | Detail |
| CX9g054993 | 9:14,504,488-14,504,886 | - | - | - | - | - | - | Detail |
| CX9g057477 | 9:14,509,224-14,509,484 | - | - | - | - | - | - | Detail |
| CX9g054901 | 9:14,512,381-14,512,979 | + | - | - | - | - | - | Detail |
| CX9g054902 | 9:14,538,613-14,541,074 | + | C1H9g01763 | C2H9g07425 | LOC_Os09g27650 | Os09g0449400 | IDD13 | Detail |
| CX9g058036 | 9:14,548,403-14,549,658 | + | C1H9g25929 | C2H9g06801 | LOC_Os09g27660 | Os09g0449500 | - | Detail |
| CX9g055092 | 9:14,553,237-14,555,168 | + | C1H9g24951 | C2H9g00964 | LOC_Os09g27570 | Os09g0449600 | - | Detail |
| CX9g055187 | 9:14,560,019-14,560,231 | + | - | - | - | Os09g0449700 | - | Detail |
| CX9g056221 | 9:14,563,929-14,566,029 | + | C1H9g21509 | C2H9g26524 | LOC_Os09g27680 | Os09g0449800 | - | Detail |
| CX9g058164 | 9:14,570,244-14,571,401 | + | C1H9g08384 | C2H9g13669 | LOC_Os09g27690 | Os09g0450200 | - | Detail |
| CX9g057479 | 9:14,573,377-14,577,841 | - | C1H9g06430 | C2H9g25772 | LOC_Os09g27700 | Os09g0450300 | - | Detail |
| CX9g057225 | 9:14,593,035-14,593,843 | + | C1H9g22970 | C2H9g17119 | LOC_Os09g27730 | Os09g0450600 | - | Detail |
| CX9g057122 | 9:14,595,804-14,596,910 | - | C1H9g31330 | C2H9g24868 | LOC_Os09g27750 | Os09g0451000 | ACO1, OsACO1, ACO | Detail |
| CX9g055115 | 9:14,610,058-14,611,187 | + | C1H9g25747 | C2H9g13280 | LOC_Os09g27820 | Os09g0451400 | ACO2, OsACO2 | Detail |
| CX9g057921 | 9:14,614,973-14,619,519 | + | C1H9g11732 | C2H9g08067 | LOC_Os09g27830 | Os09g0451500 | PDIL2;3 | Detail |
| CX9g055082 | 9:14,622,881-14,623,485 | + | C1H9g16453 | C2H9g26990 | LOC_Os09g27850 | Os09g0451700 | - | Detail |
| CX9g055736 | 9:14,627,520-14,628,215 | - | - | - | LOC_Os09g27860 | Os09g0451800 | - | Detail |
| CX9g054952 | 9:14,637,154-14,641,265 | + | C1H9g05298 | C2H9g21782 | LOC_Os09g27890 | Os09g0452200 | - | Detail |