| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17802 | 3:23,008,739-23,012,439 | + | C2H3g26963 | CX3g027391 | LOC_Os03g43670 | Os03g0637800 | OsCR4, MIS2 | Detail |
| C1H3g08726 | 3:23,017,635-23,026,652 | - | C2H3g21555 | CX3g029790 | LOC_Os03g43684 | Os03g0638000 | - | Detail |
| C1H3g11114 | 3:23,044,882-23,049,405 | + | C2H3g25520 | CX3g028463 | LOC_Os03g43720 | Os03g0638200 | - | Detail |
| C1H3g15945 | 3:23,051,002-23,058,423 | - | C2H3g16047 | CX3g029266 | LOC_Os03g43730 | Os03g0638300 | - | Detail |
| C1H3g27096 | 3:23,068,740-23,073,679 | + | C2H3g25175 | CX3g026087 | LOC_Os03g43760 | Os03g0638800 | - | Detail |
| C1H3g11228 | 3:23,109,368-23,125,685 | + | C2H3g20789 | CX3g027536 | LOC_Os03g43800 | - | - | Detail |
| C1H3g08955 | 3:23,136,890-23,137,938 | + | C2H3g02886 | CX3g030991 | LOC_Os03g43810 | Os03g0639300 | OsBP5 | Detail |
| C1H3g23874 | 3:23,138,323-23,139,044 | + | C2H3g02886 | CX3g030991 | LOC_Os03g43810 | Os03g0782500 | PIL13, OsPIL1, OsPIL13, OsbHLH152 | Detail |
| C1H3g03720 | 3:23,224,460-23,228,334 | - | C2H3g22381 | CX3g029268 | LOC_Os03g43840 | Os03g0639600 | - | Detail |
| C1H3g07222 | 3:23,232,911-23,237,552 | + | C2H3g06362 | CX3g025724 | LOC_Os03g43850 | Os03g0639700 | - | Detail |
| C1H3g11773 | 3:23,237,853-23,241,042 | - | C2H3g24990 | CX3g027146 | LOC_Os03g43860 | Os03g0639800 | OsVPS2 | Detail |
| C1H3g13764 | 3:23,270,774-23,278,329 | - | C2H3g01125 | CX3g026102 | LOC_Os03g43890 | Os03g0640100 | OsMSI1 | Detail |
| C1H3g15764 | 3:23,279,567-23,279,926 | - | C2H3g20329 | - | LOC_Os03g43910 | Os03g0640400 | LO9-177 | Detail |
| C1H3g09832 | 3:23,283,146-23,284,835 | - | C2H3g06880 | CX3g025959 | LOC_Os03g43900 | Os03g0640300 | - | Detail |
| C1H3g02135 | 3:23,288,535-23,291,333 | - | C2H3g28747 | - | LOC_Os03g43910 | Os03g0640400 | LO9-177 | Detail |
| C1H3g29126 | 3:23,299,509-23,305,320 | - | C2H3g10248 | CX3g025023 | LOC_Os03g43930 | Os03g0640800 | - | Detail |
| C1H3g01593 | 3:23,340,240-23,345,639 | - | C2H3g24666 | CX3g029177 | LOC_Os03g43970 | Os03g0641200 | - | Detail |
| C1H3g28158 | 3:23,350,428-23,355,402 | - | C2H3g08449 | CX3g025757 | LOC_Os03g43990 | Os03g0767600 | - | Detail |
| C1H3g19477 | 3:23,366,411-23,368,627 | + | C2H3g00183 | CX3g030013 | LOC_Os03g44000 | Os03g0641500 | - | Detail |
| C1H3g24950 | 3:23,372,807-23,375,538 | + | C2H3g23644 | CX3g028634 | LOC_Os03g44010 | Os03g0641700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g054851 | 9:14,209,565-14,211,984 | + | C1H9g06228 | C2H9g27420 | LOC_Os09g27040 | Os09g0442400 | OsGEX1 | Detail |
| CX9g058113 | 9:14,218,168-14,221,118 | + | C1H9g28611 | C2H9g03487 | LOC_Os09g27050 | Os09g0442600 | OsRSH3 | Detail |
| CX9g057038 | 9:14,224,698-14,240,404 | - | C1H9g25409 | C2H9g20875 | LOC_Os09g27060 | Os09g0442700 | OsDDM1a | Detail |
| CX9g057769 | 9:14,243,689-14,246,575 | + | C1H9g01438 | C2H9g18109 | LOC_Os09g27070 | Os09g0442800 | - | Detail |
| CX9g056575 | 9:14,249,651-14,253,592 | + | C1H9g25976 | C2H9g05302 | LOC_Os09g27080 | Os09g0442900 | - | Detail |
| CX9g055406 | 9:14,254,633-14,263,132 | - | C1H9g18855 | C2H9g09021 | LOC_Os09g27090 | Os09g0443000 | - | Detail |
| CX9g055710 | 9:14,267,459-14,276,685 | - | C1H9g26138 | - | LOC_Os09g27110 | - | - | Detail |
| CX9g055978 | 9:14,280,574-14,280,741 | - | - | - | - | - | - | Detail |
| CX9g054949 | 9:14,281,231-14,284,141 | - | C1H9g16243 | C2H9g16776 | LOC_Os09g27140 | Os09g0443500 | - | Detail |
| CX9g055339 | 9:14,284,571-14,284,918 | - | - | - | - | - | - | Detail |
| CX9g055154 | 9:14,287,718-14,289,387 | - | C1H9g02557 | C2H9g27037 | LOC_Os09g27150 | Os09g0544300 | - | Detail |
| CX9g056527 | 9:14,291,032-14,292,057 | + | C1H9g23735 | C2H9g09304 | LOC_Os09g27160 | Os09g0443800 | - | Detail |
| CX9g056496 | 9:14,309,580-14,309,828 | - | - | C2H9g15136 | LOC_Os11g38330 | Os11g0596250 | - | Detail |
| CX9g055460 | 9:14,311,631-14,317,913 | - | C1H9g17916 | C2H9g09141 | LOC_Os09g27210 | Os09g0444200 | - | Detail |
| CX9g057848 | 9:14,323,251-14,327,973 | + | C1H9g09508 | C2H9g02894 | LOC_Os09g27220 | Os09g0444500 | OsBRXL5 | Detail |
| CX9g057060 | 9:14,328,836-14,329,006 | + | - | - | - | - | - | Detail |
| CX9g055599 | 9:14,330,986-14,334,890 | - | C1H9g07241 | C2H9g30118 | LOC_Os09g27240 | Os09g0444700 | - | Detail |
| CX9g055792 | 9:14,340,766-14,341,722 | - | C1H9g06596 | C2H9g30118 | LOC_Os09g27260 | Os09g0444900 | - | Detail |
| CX9g057046 | 9:14,342,327-14,342,515 | + | - | - | - | - | - | Detail |
| CX9g057103 | 9:14,350,301-14,350,849 | - | C1H9g26826 | - | LOC_Os09g35640 | - | - | Detail |