| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g11981 | 4:22,247,167-22,262,155 | - | C2H4g20441 | CX4g034232 | LOC_Os04g43050 | Os04g0509300 | DCL4, OsDCL4, Os DCL4, Dcl4 | Detail |
| C1H4g16776 | 4:22,265,929-22,266,408 | + | C2H4g11339 | CX4g036588 | LOC_Os04g43060 | Os04g0509400 | - | Detail |
| C1H4g16652 | 4:22,273,773-22,275,269 | + | C2H4g01906 | CX2g024932 | LOC_Os04g43070 | Os04g0509600 | - | Detail |
| C1H4g26953 | 4:22,289,040-22,297,319 | + | C2H4g26482 | CX4g031449 | LOC_Os04g43130 | Os04g0510300 | - | Detail |
| C1H4g20471 | 4:22,297,962-22,303,906 | - | C2H4g00596 | CX4g031438 | LOC_Os04g43140 | Os04g0510400 | - | Detail |
| C1H4g03093 | 4:22,306,343-22,311,917 | + | C2H4g19563 | CX4g035958 | LOC_Os04g43150 | Os04g0510500 | - | Detail |
| C1H4g15211 | 4:22,312,483-22,313,610 | - | C2H4g02205 | CX4g032117 | LOC_Os04g43160 | Os04g0510600 | - | Detail |
| C1H4g29813 | 4:22,314,260-22,316,880 | - | C2H4g20983 | CX4g033894 | LOC_Os04g43164 | Os04g0510700 | - | Detail |
| C1H4g14181 | 4:22,318,026-22,318,794 | - | C2H4g07283 | CX4g036379 | LOC_Os04g43170 | Os04g0510900 | - | Detail |
| C1H4g12029 | 4:22,319,072-22,319,383 | - | C2H4g07283 | CX4g036379 | LOC_Os04g43170 | Os04g0510900 | - | Detail |
| C1H4g05553 | 4:22,324,231-22,325,673 | - | C2H4g15069 | CX4g033517 | LOC_Os04g43200 | Os04g0511200 | OsClo5, OsEFA27 | Detail |
| C1H4g09400 | 4:22,327,296-22,329,770 | - | C2H4g28433 | CX4g033340 | LOC_Os04g43210 | Os04g0511400 | - | Detail |
| C1H4g08179 | 4:22,333,306-22,339,230 | - | C2H4g23749 | CX4g035801 | LOC_Os04g43220 | Os04g0511600 | - | Detail |
| C1H4g06483 | 4:22,340,677-22,342,821 | - | C2H4g20352 | CX4g032463 | LOC_Os04g43230 | Os04g0511700 | - | Detail |
| C1H4g23962 | 4:22,345,909-22,354,374 | - | C2H4g11071 | CX4g032044 | LOC_Os04g43270 | Os04g0512200 | - | Detail |
| C1H4g05127 | 4:22,357,820-22,358,279 | - | C2H4g01985 | CX4g033280 | LOC_Os04g43290 | Os04g0512300 | OsGASD | Detail |
| C1H4g13576 | 4:22,359,001-22,360,364 | - | C2H4g01985 | CX4g033280 | LOC_Os04g43290 | Os04g0512300 | OsGASD | Detail |
| C1H4g19931 | 4:22,360,962-22,365,118 | - | C2H4g16701 | CX4g034378 | LOC_Os04g43300 | Os04g0512400 | - | Detail |
| C1H4g27340 | 4:22,367,404-22,367,799 | - | C2H4g10802 | CX4g035063 | LOC_Os04g43310 | Os04g0512500 | - | Detail |
| C1H4g13563 | 4:22,380,486-22,385,136 | - | C2H4g29440 | CX4g033268 | LOC_Os04g43340 | Os04g0512900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g056726 | 9:13,308,524-13,310,992 | + | C1H9g20875 | C2H9g01199 | LOC_Os09g25550 | Os09g0423300 | - | Detail |
| CX9g056113 | 9:13,320,397-13,324,044 | + | C1H9g17486 | C2H9g29489 | LOC_Os09g25560 | Os09g0423400 | - | Detail |
| CX9g057440 | 9:13,328,720-13,330,723 | + | C1H9g03392 | C2H9g01038 | LOC_Os09g25570 | Os09g0423500 | - | Detail |
| CX9g057486 | 9:13,332,840-13,339,100 | - | C1H9g16029 | C2H9g24507 | LOC_Os09g25580 | Os09g0423600 | - | Detail |
| CX9g055033 | 9:13,341,873-13,343,717 | + | C1H9g26575 | C2H9g10831 | LOC_Os09g25590 | Os09g0423700 | - | Detail |
| CX9g056085 | 9:13,348,508-13,352,719 | + | C1H9g02235 | C2H9g25061 | - | Os09g0423800 | - | Detail |
| CX9g057342 | 9:13,365,649-13,367,936 | + | C1H9g00425 | C2H9g10731 | LOC_Os09g25610 | Os09g0424200 | - | Detail |
| CX9g056823 | 9:13,369,800-13,370,978 | - | C1H9g11995 | C2H9g23538 | LOC_Os09g25620 | Os09g0424300 | - | Detail |
| CX9g055451 | 9:13,377,972-13,378,136 | - | - | - | - | - | - | Detail |
| CX9g057732 | 9:13,380,877-13,381,335 | + | C1H9g23061 | C2H9g21679 | - | - | - | Detail |
| CX9g055223 | 9:13,383,847-13,389,009 | + | C1H9g06900 | C2H9g17706 | LOC_Os09g25640 | Os09g0424600 | - | Detail |
| CX9g054887 | 9:13,390,910-13,397,897 | - | C1H9g23183 | C2H9g22032 | LOC_Os09g25650 | Os09g0424701 | - | Detail |
| CX9g055411 | 9:13,400,717-13,406,024 | + | C1H9g29732 | - | LOC_Os09g25700 | Os09g0425300 | - | Detail |
| CX9g055237 | 9:13,419,314-13,424,870 | + | C1H9g28855 | C2H9g19428 | LOC_Os09g25760 | Os09g0425900 | OsTET13 | Detail |
| CX9g055664 | 9:13,426,929-13,428,775 | - | C1H9g03184 | C2H9g10867 | LOC_Os09g25770 | Os09g0426000 | - | Detail |
| CX9g057872 | 9:13,431,375-13,434,707 | - | C1H9g11252 | C2H9g00227 | LOC_Os09g25784 | Os09g0426100 | - | Detail |
| CX9g055177 | 9:13,442,227-13,446,406 | - | C1H9g20388 | C2H9g10149 | LOC_Os09g25810 | Os09g0426500 | - | Detail |
| CX9g056233 | 9:13,446,786-13,446,947 | + | - | - | - | - | - | Detail |
| CX9g056939 | 9:13,456,138-13,456,740 | + | C1H9g10490 | - | - | Os12g0183450 | - | Detail |
| CX9g056946 | 9:13,467,248-13,471,704 | + | C1H9g07571 | C2H9g14453 | LOC_Os09g25850 | Os09g0426800 | WSL2, OsGL1-1 | Detail |