| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08260 | 3:2,259,582-2,262,525 | + | C2H3g06828 | CX3g030037 | LOC_Os03g05270 | Os03g0145900 | - | Detail |
| C1H3g20268 | 3:2,263,976-2,264,901 | - | C2H3g21623 | CX3g028017 | - | - | - | Detail |
| C1H3g29909 | 3:2,265,126-2,270,153 | + | C2H3g05886 | CX3g029228 | LOC_Os03g05280 | Os03g0146000 | - | Detail |
| C1H3g25012 | 3:2,274,096-2,275,920 | - | C2H3g28085 | CX3g029808 | LOC_Os03g05290 | Os03g0146100 | - | Detail |
| C1H3g19868 | 3:2,280,784-2,281,256 | + | C2H3g09242 | CX3g025472 | LOC_Os03g05300 | Os03g0146300 | - | Detail |
| C1H3g27335 | 3:2,285,142-2,289,430 | + | C2H3g13895 | CX3g025739 | LOC_Os03g05310 | Os03g0146400 | - | Detail |
| C1H3g02545 | 3:2,292,095-2,292,415 | + | C2H3g14044 | CX3g026084 | - | - | - | Detail |
| C1H3g29062 | 3:2,292,424-2,294,517 | + | C2H3g11885 | CX3g026084 | LOC_Os03g05320 | Os03g0146500 | - | Detail |
| C1H3g17015 | 3:2,295,444-2,316,133 | + | C2H3g15286 | CX3g025922 | LOC_Os03g05330 | Os03g0146600 | - | Detail |
| C1H3g05189 | 3:2,330,831-2,331,278 | - | - | - | - | - | - | Detail |
| C1H3g30836 | 3:2,336,655-2,347,097 | - | C2H3g18202 | CX3g029888 | LOC_Os03g05390 | Os03g0147400 | - | Detail |
| C1H3g06760 | 3:2,356,866-2,361,842 | - | C2H3g23117 | CX3g025434 | LOC_Os03g05420 | Os03g0147700 | - | Detail |
| C1H3g11420 | 3:2,362,605-2,364,829 | + | C2H3g11846 | CX3g028095 | LOC_Os03g05430 | Os03g0147900 | - | Detail |
| C1H3g01679 | 3:2,365,435-2,366,677 | - | C2H3g18230 | CX3g027224 | LOC_Os03g05440 | Os03g0148000 | - | Detail |
| C1H3g05732 | 3:2,375,010-2,376,066 | - | C2H3g10578 | CX3g025933 | LOC_Os03g05450 | Os03g0148300 | - | Detail |
| C1H3g20087 | 3:2,378,263-2,379,597 | - | C2H3g08315 | CX3g026676 | LOC_Os03g05460 | Os03g0148400 | - | Detail |
| C1H3g24625 | 3:2,386,225-2,389,760 | + | C2H3g07329 | CX3g026748 | LOC_Os03g05470 | Os03g0148700 | - | Detail |
| C1H3g03956 | 3:2,393,000-2,395,698 | - | C2H3g09418 | CX3g025264 | LOC_Os03g05480 | Os03g0148800 | - | Detail |
| C1H3g20130 | 3:2,402,864-2,403,494 | + | C2H3g30161 | CX3g031194 | LOC_Os03g05500 | Os03g0149000 | - | Detail |
| C1H3g20743 | 3:2,406,487-2,407,344 | - | C2H3g15126 | CX3g024956 | LOC_Os03g05510 | Os03g0149100 | CRL1, crl1, crl1*, ARL1, ARL1/CRL1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g056556 | 9:12,756,320-12,756,628 | - | C1H12g24303 | C2H9g01644 | LOC_Os09g26790 | - | - | Detail |
| CX9g056230 | 9:12,758,248-12,758,508 | + | - | - | - | - | - | Detail |
| CX9g056335 | 9:12,761,140-12,761,504 | - | C1H9g24887 | C2H9g24987 | LOC_Os09g24590 | Os09g0412400 | - | Detail |
| CX9g057533 | 9:12,762,363-12,762,524 | + | - | - | - | - | - | Detail |
| CX9g056498 | 9:12,771,284-12,772,702 | + | C1H9g25612 | C2H9g22954 | LOC_Os09g24620 | Os09g0412700 | - | Detail |
| CX9g057109 | 9:12,775,095-12,776,606 | + | C1H9g29027 | C2H9g12558 | LOC_Os09g24640 | Os09g0412900 | - | Detail |
| CX9g055582 | 9:12,780,778-12,783,974 | + | C1H9g10917 | C2H9g30609 | LOC_Os09g24650 | Os09g0413000 | - | Detail |
| CX9g054861 | 9:12,785,438-12,788,362 | - | C1H9g25606 | C2H9g23813 | LOC_Os09g24660 | Os09g0413100 | - | Detail |
| CX9g055611 | 9:12,788,538-12,794,861 | + | C1H9g01483 | C2H9g23311 | LOC_Os09g24670 | Os09g0413200 | - | Detail |
| CX9g055527 | 9:12,795,484-12,797,805 | - | C1H9g27670 | C2H9g07064 | LOC_Os09g24680 | Os09g0413300 | OsPPR1 | Detail |
| CX9g055730 | 9:12,799,276-12,801,026 | - | C1H9g13850 | C2H9g21107 | LOC_Os09g24690 | Os09g0413500 | - | Detail |
| CX9g055962 | 9:12,802,648-12,806,971 | - | C1H9g31189 | C2H9g10108 | LOC_Os09g24700 | Os09g0413600 | - | Detail |
| CX9g057257 | 9:12,820,570-12,824,483 | + | C1H9g25839 | C2H9g16912 | LOC_Os09g24710 | Os09g0413700 | - | Detail |
| CX9g055576 | 9:12,847,780-12,848,923 | + | C1H9g16168 | C2H9g05872 | LOC_Os09g24800 | Os09g0414300 | Os2R_MYB83 | Detail |
| CX9g058206 | 9:12,852,130-12,853,218 | + | - | - | - | - | - | Detail |
| CX9g055155 | 9:12,886,687-12,887,598 | + | - | - | - | Os09g0414701 | - | Detail |
| CX9g056434 | 9:12,896,284-12,896,442 | + | - | - | - | - | - | Detail |
| CX9g057784 | 9:12,904,132-12,905,303 | + | C1H9g29440 | C2H9g10070 | LOC_Os09g24840 | Os09g0414900 | - | Detail |
| CX9g056267 | 9:12,928,845-12,931,300 | + | C1H9g06238 | C2H9g25855 | LOC_Os09g24900 | Os09g0415700 | - | Detail |
| CX9g055233 | 9:12,931,952-12,937,542 | - | C1H9g17729 | C2H9g19203 | LOC_Os09g24910 | Os09g0415800 | - | Detail |