| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g02251 | 4:29,440,701-29,440,994 | + | C2H4g07923 | CX4g035528 | LOC_Os04g56610 | - | - | Detail |
| C1H4g07215 | 4:29,444,839-29,449,014 | + | C2H4g09519 | CX4g032531 | LOC_Os04g56620 | Os04g0661600 | OsCNX1 | Detail |
| C1H4g05764 | 4:29,449,074-29,456,814 | - | C2H4g30358 | CX4g035527 | LOC_Os04g56630 | Os04g0661700 | - | Detail |
| C1H4g15510 | 4:29,458,517-29,459,700 | - | C2H4g15418 | CX4g036335 | LOC_Os04g56640 | Os04g0661800 | - | Detail |
| C1H4g17837 | 4:29,461,361-29,465,005 | + | C2H4g25643 | CX4g035742 | LOC_Os04g56646 | Os04g0661900 | - | Detail |
| C1H4g07157 | 4:29,465,879-29,467,585 | + | C2H4g06604 | CX4g035185 | LOC_Os04g56654 | - | - | Detail |
| C1H4g06952 | 4:29,468,052-29,469,832 | - | C2H4g27865 | CX4g035521 | LOC_Os04g56670 | Os04g0662100 | - | Detail |
| C1H4g20842 | 4:29,492,711-29,495,836 | - | C2H4g27508 | CX4g032460 | LOC_Os04g56700 | Os04g0662600 | F3H | Detail |
| C1H4g09059 | 4:29,497,177-29,501,717 | - | C2H4g17303 | CX4g034138 | LOC_Os04g56710 | Os04g0662700 | - | Detail |
| C1H4g13098 | 4:29,503,747-29,509,876 | + | C2H4g16716 | CX4g034339 | LOC_Os04g56720 | Os04g0662800 | - | Detail |
| C1H4g29894 | 4:29,510,592-29,512,553 | - | C2H4g14267 | CX4g033445 | LOC_Os04g56730 | Os04g0662900 | - | Detail |
| C1H4g08308 | 4:29,529,386-29,535,319 | + | C2H4g26679 | CX4g032535 | LOC_Os04g56740 | Os04g0663100 | - | Detail |
| C1H4g00285 | 4:29,538,771-29,544,273 | - | C2H4g19453 | CX4g033028 | LOC_Os04g56750 | Os04g0663200 | - | Detail |
| C1H4g10605 | 4:29,546,843-29,547,097 | + | C2H4g23478 | CX4g034501 | - | - | - | Detail |
| C1H4g18316 | 4:29,547,148-29,550,525 | + | C2H4g29870 | CX4g032009 | LOC_Os04g56770 | Os04g0663500 | - | Detail |
| C1H4g08413 | 4:29,551,368-29,552,386 | - | C2H4g27682 | CX4g035961 | LOC_Os04g56780 | Os04g0663600 | WOX1, Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS | Detail |
| C1H4g06808 | 4:29,560,529-29,567,508 | - | C2H4g25028 | CX4g034853 | LOC_Os04g56790 | Os04g0663700 | - | Detail |
| C1H4g18422 | 4:29,575,958-29,581,942 | - | C2H4g20102 | CX4g033249 | LOC_Os04g56850 | Os04g0664400 | OsARF11, OsMP | Detail |
| C1H4g28826 | 4:29,615,096-29,617,428 | - | C2H4g12473 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C1H4g05011 | 4:29,618,216-29,620,579 | - | C2H4g26922 | CX4g036377 | LOC_Os04g56930 | Os04g0664900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g055752 | 9:12,580,550-12,581,637 | + | C1H9g31476 | C2H9g03900 | LOC_Os09g24330 | Os09g0531701 | - | Detail |
| CX9g057158 | 9:12,588,952-12,590,154 | + | C1H9g18300 | C2H9g12250 | LOC_Os09g24330 | Os09g0408900 | - | Detail |
| CX9g055825 | 9:12,593,427-12,594,395 | - | - | - | - | - | - | Detail |
| CX9g055835 | 9:12,596,104-12,596,493 | - | C1H9g05049 | - | LOC_Os09g24350 | Os09g0409000 | - | Detail |
| CX9g058039 | 9:12,599,058-12,599,228 | - | - | - | - | Os02g0184100 | - | Detail |
| CX9g057897 | 9:12,611,770-12,628,085 | + | C1H9g04735 | C2H9g10480 | LOC_Os09g24440 | Os09g0410300 | TAF2 | Detail |
| CX9g055674 | 9:12,631,602-12,634,619 | + | C1H9g12574 | C2H9g06736 | - | - | - | Detail |
| CX9g055392 | 9:12,647,985-12,648,710 | + | C1H9g03060 | - | LOC_Os09g24480 | Os09g0410500 | REP1, SDP1 | Detail |
| CX9g058102 | 9:12,668,003-12,670,397 | - | C1H9g20900 | C2H9g24788 | LOC_Os09g24490 | Os09g0410700 | - | Detail |
| CX9g055159 | 9:12,679,562-12,680,818 | + | C1H9g20141 | C2H9g22733 | - | - | - | Detail |
| CX9g057248 | 9:12,682,686-12,682,883 | + | - | - | - | - | - | Detail |
| CX9g057630 | 9:12,684,296-12,685,216 | - | C1H9g04476 | C2H9g26695 | LOC_Os09g28820 | Os02g0265300 | - | Detail |
| CX9g057499 | 9:12,687,255-12,689,296 | + | C1H9g14098 | C2H9g29686 | - | Os09g0411500 | - | Detail |
| CX9g055250 | 9:12,689,975-12,691,630 | - | C1H9g27648 | C2H9g07064 | LOC_Os09g24520 | Os09g0411600 | - | Detail |
| CX9g055887 | 9:12,692,619-12,694,815 | - | C1H9g15710 | C2H9g24020 | LOC_Os09g24530 | Os09g0411650 | - | Detail |
| CX9g056687 | 9:12,714,370-12,714,555 | - | - | - | - | - | - | Detail |
| CX9g056752 | 9:12,716,613-12,717,045 | - | - | C2H9g16512 | - | - | - | Detail |
| CX9g056470 | 9:12,722,704-12,723,279 | - | - | - | - | - | - | Detail |
| CX9g055609 | 9:12,724,405-12,727,161 | - | C1H9g04539 | C2H9g29693 | LOC_Os09g24570 | Os09g0412200 | - | Detail |
| CX9g054907 | 9:12,729,559-12,730,017 | - | C1H9g10655 | C2H9g21780 | LOC_Os09g24580 | Os09g0412300 | - | Detail |