| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H6g02505 | 6:23,805,208-23,808,332 | + | C2H6g14833 | CX6g045983 | LOC_Os06g45410 | Os06g0664800 | - | Detail |
| C1H6g05921 | 6:23,811,496-23,812,391 | + | C2H6g14833 | CX6g045983 | LOC_Os06g45420 | Os06g0664900 | - | Detail |
| C1H6g15108 | 6:23,814,443-23,817,974 | + | C2H6g00067 | CX6g041356 | LOC_Os06g45430 | Os06g0665000 | - | Detail |
| C1H6g06152 | 6:23,818,216-23,820,012 | - | C2H6g17880 | CX6g041675 | LOC_Os06g45440 | Os06g0665100 | - | Detail |
| C1H6g22830 | 6:23,821,406-23,822,652 | - | C2H6g03277 | CX6g045958 | LOC_Os06g45450 | Os06g0665200 | - | Detail |
| C1H6g16253 | 6:23,828,480-23,830,730 | - | C2H6g02226 | CX6g045292 | LOC_Os06g45460 | Os06g0665400 | APO1, apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393 | Detail |
| C1H6g09339 | 6:23,841,125-23,845,351 | - | C2H6g26324 | CX6g042079 | LOC_Os06g45480 | Os06g0665500 | OsAAH | Detail |
| C1H6g29065 | 6:23,857,926-23,863,939 | - | C2H6g03492 | CX6g045639 | LOC_Os06g45500 | Os06g0665800 | HMA9, OsHMA9 ,oshma9-1, oshma9-2, HMA9 | Detail |
| C1H6g18112 | 6:23,869,494-23,871,887 | + | C2H6g11562 | CX6g045580 | LOC_Os06g45510 | Os06g0665900 | - | Detail |
| C1H6g21015 | 6:23,886,082-23,889,910 | + | C2H6g00145 | CX6g042910 | LOC_Os06g45540 | Os06g0666100 | SG6, GL6 | Detail |
| C1H6g24164 | 6:23,914,434-23,915,075 | + | - | CX6g042900 | LOC_Os06g45570 | Os06g0666400 | OsVQ25 | Detail |
| C1H6g09228 | 6:23,918,570-23,919,115 | + | C2H6g24158 | CX6g041424 | LOC_Os06g45580 | Os06g0666500 | - | Detail |
| C1H6g25662 | 6:23,921,637-23,925,360 | - | C2H6g07620 | CX6g043004 | LOC_Os06g45590 | Os06g0666600 | - | Detail |
| C1H6g20256 | 6:23,929,108-23,929,899 | + | - | CX6g045463 | LOC_Os06g45600 | - | - | Detail |
| C1H6g24049 | 6:23,940,235-23,940,543 | + | - | CX6g043314 | LOC_Os06g45610 | Os06g0666800 | - | Detail |
| C1H6g24780 | 6:23,942,548-23,943,519 | - | - | - | - | - | - | Detail |
| C1H6g10238 | 6:23,943,737-23,945,871 | - | C2H6g17606 | CX6g042443 | LOC_Os06g45620 | - | - | Detail |
| C1H6g29045 | 6:23,959,445-23,962,624 | + | C2H6g09505 | CX6g042136 | LOC_Os06g45630 | Os06g0667000 | - | Detail |
| C1H6g16433 | 6:23,968,678-23,969,430 | + | C2H2g02842 | CX6g043046 | LOC_Os06g45640 | Os06g0667100 | OsNF-YC4, HAP5B | Detail |
| C1H6g30018 | 6:23,974,989-23,975,201 | + | C2H6g26041 | CX6g045638 | LOC_Os06g45650 | Os06g0667200 | MADS30, OsMADS30 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g055354 | 9:12,121,997-12,122,284 | - | - | - | - | - | - | Detail |
| CX9g055979 | 9:12,124,776-12,125,234 | - | C1H9g10547 | - | LOC_Os09g23370 | Os09g0397700 | - | Detail |
| CX9g057737 | 9:12,125,691-12,130,775 | + | C1H9g24684 | C2H9g18131 | LOC_Os09g23380 | Os09g0397900 | - | Detail |
| CX9g057334 | 9:12,152,000-12,152,957 | - | C1H9g09191 | C2H9g10017 | - | - | - | Detail |
| CX9g054909 | 9:12,211,220-12,211,483 | + | C1H9g24092 | - | - | Os09g0399502 | - | Detail |
| CX9g057398 | 9:12,218,914-12,220,243 | - | C1H9g14660 | C2H9g17549 | LOC_Os09g23530 | Os09g0399800 | - | Detail |
| CX9g054869 | 9:12,222,936-12,224,664 | - | C1H9g20560 | C2H9g11831 | LOC_Os09g23540 | Os09g0400300 | - | Detail |
| CX9g056306 | 9:12,230,500-12,232,313 | + | C1H9g22888 | C2H9g00236 | LOC_Os09g23550 | Os09g0400300 | - | Detail |
| CX9g054928 | 9:12,235,869-12,237,806 | + | C1H9g31530 | C2H9g06042 | LOC_Os09g23570 | Os09g0400500 | - | Detail |
| CX9g054916 | 9:12,244,274-12,244,579 | + | C1H9g28125 | - | LOC_Os09g23590 | Os09g0400700 | - | Detail |
| CX9g057220 | 9:12,245,118-12,245,606 | - | - | C2H9g21119 | LOC_Os09g23595 | Os09g0400600 | - | Detail |
| CX9g058058 | 9:12,255,501-12,256,517 | + | C1H9g17981 | C2H9g02341 | LOC_Os09g23620 | Os09g0401000 | Os2R_MYB82 | Detail |
| CX9g055133 | 9:12,267,982-12,268,194 | + | - | - | - | - | - | Detail |
| CX9g057812 | 9:12,275,104-12,278,606 | + | C1H9g21372 | C2H9g11860 | LOC_Os09g23640 | Os09g0401100 | ABCG21, OsABCG21, STR1 | Detail |
| CX9g055812 | 9:12,279,337-12,281,297 | - | C1H9g02031 | C2H9g15858 | LOC_Os09g23650 | Os09g0401200 | TRXH3, antiSTR1 | Detail |
| CX9g057187 | 9:12,284,225-12,286,226 | - | C1H9g22130 | C2H9g19314 | LOC_Os09g23650 | Os09g0401300 | - | Detail |
| CX9g057277 | 9:12,305,292-12,308,670 | - | C1H9g11440 | C2H9g17598 | LOC_Os09g23690 | Os09g0401600 | - | Detail |
| CX9g057498 | 9:12,319,273-12,319,497 | + | - | - | - | - | - | Detail |
| CX9g057072 | 9:12,320,275-12,322,722 | + | C1H9g02407 | C2H9g22902 | LOC_Os09g23720 | Os09g0401900 | - | Detail |
| CX9g058073 | 9:12,324,422-12,324,595 | - | - | - | - | - | - | Detail |