| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g19764 | 3:1,330,606-1,334,329 | - | C2H3g09637 | CX3g026825 | LOC_Os03g03470 | Os03g0126300 | - | Detail |
| C1H3g31582 | 3:1,335,457-1,336,167 | - | C2H3g01245 | CX3g030498 | LOC_Os03g03480 | Os03g0126450 | - | Detail |
| C1H3g28463 | 3:1,338,762-1,339,451 | + | C2H3g24889 | CX3g031250 | LOC_Os03g03490 | Os03g0126600 | - | Detail |
| C1H3g02888 | 3:1,341,626-1,342,499 | + | C2H3g03559 | CX3g026627 | LOC_Os03g03500 | Os03g0126700 | - | Detail |
| C1H3g13225 | 3:1,345,288-1,349,052 | - | C2H3g24408 | CX3g025902 | LOC_Os03g03510 | Os03g0126800 | CIPK9 | Detail |
| C1H3g17944 | 3:1,363,757-1,364,113 | - | C2H3g27173 | CX3g025296 | LOC_Os03g03520 | Os03g0126900 | - | Detail |
| C1H3g26030 | 3:1,366,868-1,368,510 | - | C2H3g18981 | CX3g025913 | LOC_Os03g03530 | Os03g0127000 | - | Detail |
| C1H3g10455 | 3:1,368,703-1,368,945 | + | C2H3g03780 | - | - | - | - | Detail |
| C1H3g07061 | 3:1,370,739-1,373,094 | - | C2H3g10836 | CX3g025702 | LOC_Os03g03540 | Os03g0624600 | - | Detail |
| C1H3g08724 | 3:1,391,370-1,393,759 | + | C2H3g05840 | CX3g026687 | LOC_Os03g03550 | Os03g0127500 | - | Detail |
| C1H3g30951 | 3:1,394,084-1,399,068 | - | C2H3g22731 | CX3g027794 | LOC_Os03g03560 | Os03g0127600 | - | Detail |
| C1H3g04194 | 3:1,401,840-1,405,188 | + | C2H3g10932 | CX3g029550 | LOC_Os03g03570 | Os03g0127700 | - | Detail |
| C1H3g21101 | 3:1,408,304-1,415,858 | - | C2H3g19343 | CX3g028222 | LOC_Os03g03590 | Os03g0127900 | - | Detail |
| C1H3g15997 | 3:1,419,564-1,420,769 | + | C2H3g04515 | CX3g029732 | LOC_Os03g03600 | Os03g0128000 | - | Detail |
| C1H3g11304 | 3:1,422,238-1,442,796 | - | C2H3g21656 | CX3g027243 | LOC_Os03g03610 | Os03g0128100 | - | Detail |
| C1H3g22245 | 3:1,447,989-1,448,556 | - | C2H3g11243 | CX3g025297 | LOC_Os03g03630 | Os03g0128300 | - | Detail |
| C1H3g27628 | 3:1,449,997-1,451,209 | - | C2H3g19615 | CX3g029085 | LOC_Os03g03640 | Os03g0128400 | - | Detail |
| C1H3g25549 | 3:1,452,071-1,455,805 | - | C2H3g24976 | CX3g029868 | LOC_Os03g03650 | Os03g0128500 | OsPolδ2 | Detail |
| C1H3g29800 | 3:1,467,042-1,471,416 | + | C2H3g12077 | CX3g027339 | LOC_Os03g03660 | Os03g0128700 | OsCPK7, OsCDPK13, OsCDPK1, OsCDPK11, OsCDPK12 | Detail |
| C1H3g05509 | 3:1,472,015-1,473,408 | - | C2H3g19950 | CX3g030927 | LOC_Os03g03670 | Os03g0128800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g056898 | 9:11,807,759-11,808,127 | - | - | - | - | - | - | Detail |
| CX9g056020 | 9:11,812,802-11,816,824 | + | C1H9g23102 | C2H9g12396 | LOC_Os09g22440 | Os09g0392000 | - | Detail |
| CX9g054898 | 9:11,819,159-11,822,416 | + | C1H9g00211 | C2H9g04209 | LOC_Os09g22450 | Os09g0392100 | OsEDS1 | Detail |
| CX9g057799 | 9:11,849,884-11,854,901 | + | C1H9g11219 | C2H9g01293 | LOC_Os09g22540 | Os09g0393200 | OsJMJ718 | Detail |
| CX9g058011 | 9:11,867,756-11,867,989 | - | - | - | - | - | - | Detail |
| CX9g057399 | 9:11,879,413-11,886,780 | - | C1H9g30997 | C2H9g12185 | LOC_Os09g23070 | Os09g0394100 | - | Detail |
| CX9g057598 | 9:11,888,143-11,896,407 | - | C1H9g09905 | C2H9g23876 | LOC_Os09g23084 | Os09g0394300 | - | Detail |
| CX9g057002 | 9:11,924,002-11,928,244 | + | C1H9g21012 | C2H9g25736 | LOC_Os09g23110 | Os09g0394500 | OspGlcT3 | Detail |
| CX9g057018 | 9:11,934,518-11,936,751 | - | C1H9g11161 | C2H9g21887 | LOC_Os09g23140 | Os09g0394600 | - | Detail |
| CX9g056382 | 9:11,941,482-11,945,505 | - | C1H9g04354 | C2H9g21887 | LOC_Os09g23150 | Os09g0394700 | - | Detail |
| CX9g056041 | 9:11,951,732-11,956,267 | + | C1H9g07311 | C2H9g12341 | LOC_Os09g23160 | Os09g0394900 | - | Detail |
| CX9g057525 | 9:12,011,224-12,016,975 | + | C1H9g00378 | C2H9g06605 | LOC_Os09g23200 | Os09g0395300 | RL9, rl9, OsADD1 | Detail |
| CX9g056960 | 9:12,033,094-12,034,500 | - | C1H9g06586 | C2H9g01641 | LOC_Os09g23220 | Os09g0395600 | - | Detail |
| CX9g056289 | 9:12,047,087-12,048,607 | + | C1H9g04135 | C2H9g28359 | LOC_Os09g23280 | Os09g0396300 | - | Detail |
| CX9g057914 | 9:12,052,995-12,053,297 | - | C1H9g21323 | - | - | - | - | Detail |
| CX9g058057 | 9:12,071,995-12,072,147 | + | - | - | - | - | - | Detail |
| CX9g055871 | 9:12,075,617-12,076,923 | + | C1H9g25860 | C2H9g19158 | LOC_Os09g23300 | Os09g0396900 | OsVIT2 | Detail |
| CX9g056819 | 9:12,102,540-12,102,722 | - | - | - | - | - | - | Detail |
| CX9g056954 | 9:12,111,119-12,114,018 | + | C1H9g07186 | C2H9g25337 | LOC_Os09g23350 | Os09g0397300 | - | Detail |
| CX9g057642 | 9:12,116,352-12,117,989 | - | C1H9g18089 | C2H9g27674 | LOC_Os09g23360 | Os09g0397400 | - | Detail |