| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g16452 | 3:33,046,539-33,047,911 | - | C1H3g04119 | CX3g031284 | LOC_Os03g64340 | Os03g0861400 | - | Detail |
| C2H3g12472 | 3:33,054,436-33,059,715 | - | C1H3g17429 | CX3g030656 | LOC_Os03g64350 | Os03g0861700 | - | Detail |
| C2H3g08959 | 3:33,059,879-33,062,631 | + | C1H3g24824 | CX3g028909 | LOC_Os03g64360 | Os03g0861800 | - | Detail |
| C2H3g16629 | 3:33,072,868-33,079,793 | + | C1H3g08341 | CX3g029193 | LOC_Os03g64400 | Os03g0862100 | - | Detail |
| C2H3g28738 | 3:33,082,826-33,084,731 | - | - | CX3g027325 | LOC_Os03g64415 | - | - | Detail |
| C2H4g04859 | 4:3,816-6,198 | + | C1H6g20714 | CX6g041752 | LOC_Os06g01840 | Os06g0107600 | - | Detail |
| C2H4g12961 | 4:6,554-8,915 | - | C1H6g26100 | CX6g042457 | LOC_Os06g01850 | Os06g0107700 | OsLFNR2, LFNR2, FNR | Detail |
| C2H4g04026 | 4:11,903-12,487 | - | - | CX6g041557 | LOC_Os06g01860 | Os06g0107800 | BPH29 | Detail |
| C2H4g21175 | 4:18,091-18,357 | + | C1H6g12285 | CX6g042594 | LOC_Os06g01890 | Os06g0108500 | - | Detail |
| C2H4g10486 | 4:20,285-22,820 | + | C1H6g01350 | CX6g042594 | LOC_Os06g01890 | Os06g0108500 | - | Detail |
| C2H4g22338 | 4:23,536-24,372 | - | - | CX6g042160 | LOC_Os06g01920 | Os06g0108600 | - | Detail |
| C2H4g13792 | 4:35,633-38,645 | + | C1H6g04390 | CX6g043309 | LOC_Os06g01934 | - | - | Detail |
| C2H4g26823 | 4:39,446-40,543 | - | - | CX6g041477 | LOC_Os06g01950 | Os06g0109000 | - | Detail |
| C2H4g18764 | 4:42,224-42,691 | - | - | CX6g041174 | LOC_Os06g01960 | Os06g0109100 | - | Detail |
| C2H4g20581 | 4:50,539-52,867 | - | C1H4g20758 | - | - | - | - | Detail |
| C2H4g20979 | 4:57,481-57,976 | - | C1H4g13734 | CX4g036368 | - | - | - | Detail |
| C2H4g12191 | 4:104,764-106,551 | - | C1H4g16035 | - | - | - | - | Detail |
| C2H4g13233 | 4:105,552-108,242 | + | C1H4g00861 | CX4g032894 | LOC_Os04g01070 | Os04g0100300 | - | Detail |
| C2H4g05647 | 4:152,099-161,042 | + | C1H4g00970 | CX4g034809 | LOC_Os04g01130 | Os04g0101300 | - | Detail |
| C2H4g16448 | 4:162,988-164,816 | - | C1H4g04170 | CX4g034027 | LOC_Os04g01140 | Os04g0101400 | CYP93G1, OsCYP93G1, OsFNSII, FNSII | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003560 | 1:2,613,847-2,618,909 | - | C1H1g18412 | C2H1g28220 | LOC_Os01g06550 | Os01g0158900 | - | Detail |
| CX1g003324 | 1:2,620,064-2,620,959 | - | C1H1g02740 | C2H1g07454 | LOC_Os01g06560 | Os01g0159000 | OsDOG1L-1 | Detail |
| CX1g002516 | 1:2,624,600-2,625,409 | - | - | C2H1g05303 | LOC_Os01g06580 | Os01g0159200 | - | Detail |
| CX1g003405 | 1:2,627,518-2,629,751 | - | C1H1g02418 | C2H1g08729 | LOC_Os01g06590 | Os01g0159300 | - | Detail |
| CX1g003155 | 1:2,635,912-2,641,422 | - | C1H1g01252 | C2H1g06991 | LOC_Os01g06600 | Os01g0159400 | - | Detail |
| CX1g003151 | 1:2,641,883-2,642,433 | + | - | - | - | - | - | Detail |
| CX1g001170 | 1:2,649,218-2,649,601 | - | C1H1g21645 | C2H1g28217 | LOC_Os01g06630 | Os01g0159600 | OsLEA1a | Detail |
| CX1g001891 | 1:2,653,605-2,654,794 | + | C1H1g22893 | C2H1g08769 | LOC_Os01g13460 | Os01g0159800 | OsbHLH035 | Detail |
| CX1g004847 | 1:2,656,917-2,660,017 | - | C1H1g13369 | C2H1g08402 | LOC_Os01g06660 | Os01g0160100 | - | Detail |
| CX1g003449 | 1:2,793,120-2,793,305 | - | - | - | - | - | - | Detail |
| CX1g002812 | 1:2,829,670-2,831,030 | - | C1H1g12656 | C2H1g17955 | LOC_Os01g09010 | - | - | Detail |
| CX1g001881 | 1:2,831,650-2,835,916 | + | C1H1g24044 | C2H1g01310 | LOC_Os01g07070 | Os01g0164400 | - | Detail |
| CX1g000968 | 1:2,837,666-2,840,940 | - | C1H1g01954 | C2H1g17499 | LOC_Os01g07080 | Os01g0164500 | - | Detail |
| CX1g003856 | 1:2,841,412-2,844,042 | - | C1H1g15703 | C2H1g10134 | LOC_Os01g07090 | Os01g0164600 | - | Detail |
| CX1g006755 | 1:2,844,490-2,850,922 | + | C1H1g09727 | C2H1g02724 | LOC_Os01g07100 | Os01g0164700 | - | Detail |
| CX1g002577 | 1:2,851,538-2,851,813 | - | - | - | - | - | - | Detail |
| CX1g005744 | 1:2,851,871-2,852,104 | + | C1H6g31651 | C2H6g01158 | - | - | - | Detail |
| CX1g006690 | 1:2,855,201-2,864,966 | - | C1H1g24474 | C2H1g08155 | LOC_Os01g07110 | Os01g0164800 | OsBRCA2 | Detail |
| CX1g005149 | 1:2,865,364-2,868,207 | + | C1H1g28709 | C2H1g23761 | LOC_Os01g07120 | Os01g0165000 | - | Detail |
| CX1g003505 | 1:2,868,672-2,870,627 | - | C1H1g06420 | C2H1g13562 | LOC_Os01g07130 | Os01g0165100 | - | Detail |