| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g30676 | 3:20,784,935-20,789,025 | + | C1H3g31743 | CX3g027969 | LOC_Os03g40540 | Os03g0602300 | OsBRD1, OsDWARF | Detail |
| C2H3g17661 | 3:20,794,087-20,799,178 | + | C1H3g17649 | CX3g026097 | LOC_Os03g40550 | Os03g0602600 | HSA1, OsFLN2, HSA1/OsFLN2 | Detail |
| C2H3g06081 | 3:20,802,911-20,808,131 | - | C1H3g14588 | CX3g026160 | LOC_Os03g40610 | Os03g0603100 | - | Detail |
| C2H3g09028 | 3:20,872,653-20,876,352 | + | C1H3g26758 | CX3g029684 | LOC_Os03g40670 | Os03g0603600 | - | Detail |
| C2H3g19200 | 3:20,924,799-20,925,579 | + | C1H3g15118 | CX3g029136 | - | Os03g0789600 | - | Detail |
| C2H3g23447 | 3:20,937,852-20,939,276 | + | C1H3g27392 | CX3g025313 | LOC_Os03g40770 | Os03g0604566 | - | Detail |
| C2H3g01476 | 3:20,940,772-20,946,213 | - | C1H3g29572 | CX3g029068 | LOC_Os03g40780 | Os03g0604600 | - | Detail |
| C2H3g29089 | 3:20,994,865-20,996,867 | - | C1H3g15527 | CX3g025804 | LOC_Os03g40930 | Os03g0606100 | - | Detail |
| C2H3g00163 | 3:21,042,269-21,044,985 | - | C1H3g29161 | CX3g025127 | LOC_Os03g41064 | Os03g0208500 | NRAMP2, OsNramp2, OsNRAMP2 | Detail |
| C2H3g26892 | 3:21,057,321-21,057,773 | - | C1H3g01431 | - | LOC_Os03g41050 | Os03g0607100 | - | Detail |
| C2H3g02928 | 3:21,058,798-21,059,152 | - | C1H3g01550 | CX3g027262 | LOC_Os03g41060 | Os03g0607200 | - | Detail |
| C2H3g23130 | 3:21,068,563-21,070,046 | - | C1H12g22810 | - | - | - | - | Detail |
| C2H3g22608 | 3:21,085,564-21,088,849 | - | C1H3g28561 | CX3g025127 | LOC_Os03g41070 | Os03g0607400 | - | Detail |
| C2H3g05599 | 3:21,090,319-21,095,973 | + | C1H3g18716 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C2H3g06432 | 3:21,097,436-21,097,702 | + | C1H3g08205 | CX3g026140 | - | - | - | Detail |
| C2H3g18057 | 3:21,100,668-21,115,704 | + | C1H3g15026 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C2H3g23306 | 3:21,116,126-21,117,088 | - | C1H3g16629 | CX3g027100 | - | Os03g0653900 | - | Detail |
| C2H3g00656 | 3:21,209,983-21,210,727 | + | - | - | - | - | - | Detail |
| C2H3g10659 | 3:21,214,357-21,222,145 | - | C1H3g05229 | CX3g025340 | - | Os03g0680100 | - | Detail |
| C2H3g06565 | 3:21,284,912-21,286,026 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003560 | 1:2,613,847-2,618,909 | - | C1H1g18412 | C2H1g28220 | LOC_Os01g06550 | Os01g0158900 | - | Detail |
| CX1g003324 | 1:2,620,064-2,620,959 | - | C1H1g02740 | C2H1g07454 | LOC_Os01g06560 | Os01g0159000 | OsDOG1L-1 | Detail |
| CX1g002516 | 1:2,624,600-2,625,409 | - | - | C2H1g05303 | LOC_Os01g06580 | Os01g0159200 | - | Detail |
| CX1g003405 | 1:2,627,518-2,629,751 | - | C1H1g02418 | C2H1g08729 | LOC_Os01g06590 | Os01g0159300 | - | Detail |
| CX1g003155 | 1:2,635,912-2,641,422 | - | C1H1g01252 | C2H1g06991 | LOC_Os01g06600 | Os01g0159400 | - | Detail |
| CX1g003151 | 1:2,641,883-2,642,433 | + | - | - | - | - | - | Detail |
| CX1g001170 | 1:2,649,218-2,649,601 | - | C1H1g21645 | C2H1g28217 | LOC_Os01g06630 | Os01g0159600 | OsLEA1a | Detail |
| CX1g001891 | 1:2,653,605-2,654,794 | + | C1H1g22893 | C2H1g08769 | LOC_Os01g13460 | Os01g0159800 | OsbHLH035 | Detail |
| CX1g004847 | 1:2,656,917-2,660,017 | - | C1H1g13369 | C2H1g08402 | LOC_Os01g06660 | Os01g0160100 | - | Detail |
| CX1g003449 | 1:2,793,120-2,793,305 | - | - | - | - | - | - | Detail |
| CX1g002812 | 1:2,829,670-2,831,030 | - | C1H1g12656 | C2H1g17955 | LOC_Os01g09010 | - | - | Detail |
| CX1g001881 | 1:2,831,650-2,835,916 | + | C1H1g24044 | C2H1g01310 | LOC_Os01g07070 | Os01g0164400 | - | Detail |
| CX1g000968 | 1:2,837,666-2,840,940 | - | C1H1g01954 | C2H1g17499 | LOC_Os01g07080 | Os01g0164500 | - | Detail |
| CX1g003856 | 1:2,841,412-2,844,042 | - | C1H1g15703 | C2H1g10134 | LOC_Os01g07090 | Os01g0164600 | - | Detail |
| CX1g006755 | 1:2,844,490-2,850,922 | + | C1H1g09727 | C2H1g02724 | LOC_Os01g07100 | Os01g0164700 | - | Detail |
| CX1g002577 | 1:2,851,538-2,851,813 | - | - | - | - | - | - | Detail |
| CX1g005744 | 1:2,851,871-2,852,104 | + | C1H6g31651 | C2H6g01158 | - | - | - | Detail |
| CX1g006690 | 1:2,855,201-2,864,966 | - | C1H1g24474 | C2H1g08155 | LOC_Os01g07110 | Os01g0164800 | OsBRCA2 | Detail |
| CX1g005149 | 1:2,865,364-2,868,207 | + | C1H1g28709 | C2H1g23761 | LOC_Os01g07120 | Os01g0165000 | - | Detail |
| CX1g003505 | 1:2,868,672-2,870,627 | - | C1H1g06420 | C2H1g13562 | LOC_Os01g07130 | Os01g0165100 | - | Detail |