| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g26939 | 3:5,827,730-5,829,663 | + | C2H3g21341 | CX3g025280 | LOC_Os03g12440 | - | - | Detail |
| C1H3g23318 | 3:5,830,907-5,831,606 | + | C2H3g03359 | CX3g025280 | LOC_Os03g12440 | - | - | Detail |
| C1H3g17135 | 3:5,832,929-5,841,582 | + | C2H3g24748 | CX3g030046 | LOC_Os03g12450 | Os03g0225500 | - | Detail |
| C1H3g25680 | 3:5,842,305-5,848,977 | + | C2H3g09129 | CX3g028144 | LOC_Os03g12460 | Os03g0225600 | - | Detail |
| C1H3g10808 | 3:5,850,410-5,855,399 | + | C2H3g02566 | CX3g025098 | LOC_Os03g12470 | Os03g0225700 | WAK25, OsWAK25 | Detail |
| C1H3g31142 | 3:5,859,958-5,861,394 | + | C2H3g16646 | CX3g026072 | LOC_Os03g12500 | Os03g0225900 | - | Detail |
| C1H3g02465 | 3:5,868,214-5,869,065 | - | C2H3g10692 | CX3g026153 | LOC_Os03g12510 | Os03g0226200 | Hb2, OsPgb1.2 | Detail |
| C1H3g31559 | 3:5,870,535-5,872,232 | + | C2H3g15869 | CX3g028573 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| C1H3g14266 | 3:5,872,381-5,872,951 | + | C2H3g08794 | CX3g028573 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| C1H3g15877 | 3:5,878,805-5,883,431 | + | C2H3g29082 | CX3g027606 | LOC_Os03g12530 | Os03g0226400 | - | Detail |
| C1H3g27940 | 3:5,889,656-5,896,396 | + | C2H3g13286 | CX3g025975 | LOC_Os03g12550 | Os03g0226600 | - | Detail |
| C1H3g15687 | 3:5,897,248-5,899,040 | - | C2H3g30568 | CX3g027982 | LOC_Os03g12560 | Os03g0226700 | - | Detail |
| C1H3g18854 | 3:5,900,286-5,906,068 | + | C2H3g00790 | CX3g024984 | LOC_Os03g12570 | Os03g0226800 | CMT3b | Detail |
| C1H3g26728 | 3:5,907,227-5,910,038 | + | C2H3g22427 | CX3g027871 | LOC_Os03g12570 | Os03g0226901 | - | Detail |
| C1H3g26232 | 3:5,913,957-5,921,379 | + | C2H3g07335 | CX3g030829 | LOC_Os03g12590 | Os03g0227000 | - | Detail |
| C1H3g22048 | 3:5,923,945-5,931,937 | + | C2H3g16667 | CX3g026050 | LOC_Os03g12610 | Os03g0227300 | - | Detail |
| C1H3g19915 | 3:5,932,012-5,935,453 | - | C2H3g04602 | CX3g031339 | LOC_Os03g12620 | Os03g0227400 | - | Detail |
| C1H3g13701 | 3:5,949,947-5,953,406 | + | C2H3g27028 | CX3g027265 | LOC_Os03g12630 | Os03g0227500 | - | Detail |
| C1H3g10637 | 3:5,969,729-5,976,810 | + | C2H3g25912 | CX3g027504 | LOC_Os03g12660 | Os03g0227700 | OsDWF4, OsDWARF4, CYP90B2 | Detail |
| C1H3g02053 | 3:5,978,556-5,981,087 | + | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g058032 | 9:9,782,786-9,782,944 | - | - | - | - | - | - | Detail |
| CX9g058086 | 9:9,823,709-9,832,062 | - | C1H9g14547 | C2H9g24613 | LOC_Os09g18020 | Os09g0349700 | - | Detail |
| CX9g054841 | 9:9,845,837-9,852,968 | - | C1H9g30812 | C2H9g25715 | LOC_Os09g18040 | Os09g0349700 | - | Detail |
| CX9g057607 | 9:9,853,465-9,853,785 | + | C1H9g13971 | C2H9g17845 | LOC_Os11g30180 | Os03g0411300 | - | Detail |
| CX9g056962 | 9:9,880,420-9,880,593 | - | - | - | - | - | - | Detail |
| CX9g055660 | 9:9,883,613-9,891,028 | - | C1H9g21112 | C2H9g09080 | LOC_Os09g19380 | Os09g0358000 | - | Detail |
| CX9g056907 | 9:9,920,276-9,935,174 | - | C1H9g19942 | C2H9g07898 | LOC_Os09g18159 | Os09g0350900 | - | Detail |
| CX9g056592 | 9:9,950,961-9,960,733 | - | C1H9g30609 | C2H9g14989 | LOC_Os09g18230 | Os09g0351800 | - | Detail |
| CX9g055868 | 9:9,992,131-9,997,589 | - | C1H9g19942 | C2H9g03446 | LOC_Os09g18260 | Os09g0350900 | - | Detail |
| CX9g055402 | 9:10,013,251-10,017,057 | - | C1H9g01685 | C2H9g28190 | LOC_Os09g18320 | Os09g0352400 | - | Detail |
| CX9g057455 | 9:10,023,594-10,024,748 | + | - | C2H9g00929 | LOC_Os09g18330 | - | - | Detail |
| CX9g056083 | 9:10,026,500-10,027,136 | - | - | C2H9g20351 | - | - | - | Detail |
| CX9g055139 | 9:10,027,169-10,027,414 | + | - | C2H9g03152 | - | - | - | Detail |
| CX9g057843 | 9:10,036,411-10,044,703 | - | C1H9g17851 | C2H9g30412 | LOC_Os09g18360 | Os09g0353200 | - | Detail |
| CX9g055425 | 9:10,057,296-10,060,109 | + | C1H9g04955 | C2H9g08214 | LOC_Os09g18390 | Os09g0353400 | - | Detail |
| CX9g055968 | 9:10,081,973-10,083,718 | + | C1H9g19178 | C2H9g08714 | LOC_Os09g18450 | Os09g0354100 | - | Detail |
| CX9g056896 | 9:10,094,562-10,100,162 | - | C1H9g24256 | C2H9g09770 | LOC_Os09g18530 | Os09g0355400 | - | Detail |
| CX9g055384 | 9:10,130,891-10,131,132 | - | - | - | - | - | - | Detail |
| CX9g055165 | 9:10,135,774-10,145,942 | + | C1H9g06855 | C2H9g17839 | LOC_Os09g18620 | Os09g0358000 | - | Detail |
| CX9g057279 | 9:10,150,761-10,158,400 | - | C1H9g17851 | C2H9g01606 | LOC_Os09g19140 | Os09g0356000 | - | Detail |