| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30733 | 3:3,265,574-3,267,124 | + | C2H3g06080 | CX3g027561 | LOC_Os03g07330 | Os03g0169300 | - | Detail |
| C1H3g17744 | 3:3,268,862-3,269,633 | - | C2H3g03131 | CX3g029153 | LOC_Os03g07340 | Os03g0169400 | - | Detail |
| C1H3g09565 | 3:3,269,930-3,274,546 | + | C2H3g06080 | CX3g030421 | LOC_Os03g07350 | Os03g0169500 | OsCSLA4 | Detail |
| C1H3g30713 | 3:3,279,687-3,282,410 | + | C2H3g15611 | CX3g029943 | LOC_Os03g07360 | Os03g0169600 | RDD4, OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12 | Detail |
| C1H3g07573 | 3:3,285,332-3,286,936 | - | C2H3g04475 | CX3g029455 | LOC_Os03g07370 | Os03g0169800 | WSL9 | Detail |
| C1H3g28123 | 3:3,288,651-3,290,857 | - | C2H3g13284 | CX3g026502 | LOC_Os03g07380 | Os03g0169900 | - | Detail |
| C1H3g30140 | 3:3,296,603-3,296,968 | - | C2H3g19051 | CX3g030142 | LOC_Os03g07400 | Os03g0170100 | - | Detail |
| C1H3g19291 | 3:3,300,332-3,303,968 | + | C2H3g20350 | CX3g026147 | LOC_Os03g07420 | Os03g0170300 | - | Detail |
| C1H3g10171 | 3:3,304,680-3,308,519 | - | C2H3g22587 | CX3g030033 | LOC_Os03g07430 | Os03g0170400 | OsRLCK102 | Detail |
| C1H3g24740 | 3:3,313,654-3,314,211 | - | C2H3g17639 | CX3g029150 | LOC_Os03g07440 | Os03g0170500 | - | Detail |
| C1H3g30202 | 3:3,320,822-3,323,552 | - | C2H3g04350 | CX3g026337 | LOC_Os03g07450 | Os03g0170600 | - | Detail |
| C1H3g13830 | 3:3,329,053-3,329,997 | + | C2H3g02647 | CX3g025444 | LOC_Os03g07470 | Os03g0170800 | - | Detail |
| C1H3g13288 | 3:3,332,199-3,338,105 | - | C2H3g25317 | CX3g025078 | LOC_Os03g07480 | Os03g0170900 | - | Detail |
| C1H3g19778 | 3:3,347,153-3,347,814 | - | C2H3g08560 | CX3g027135 | LOC_Os03g07510 | Os03g0171300 | PGL1, ILI6 | Detail |
| C1H3g11183 | 3:3,364,907-3,366,202 | + | C2H3g08984 | CX3g026056 | LOC_Os03g07530 | Os03g0171600 | - | Detail |
| C1H3g20949 | 3:3,376,558-3,377,120 | + | C2H3g13809 | CX3g031164 | LOC_Os03g07540 | Os03g0171700 | OsbHLH153 | Detail |
| C1H3g01760 | 3:3,385,229-3,389,074 | + | C2H3g25444 | CX3g025564 | LOC_Os03g07570 | Os03g0171900 | - | Detail |
| C1H3g16730 | 3:3,390,361-3,395,122 | + | C2H3g13937 | CX3g028125 | LOC_Os03g07580 | Os03g0172000 | - | Detail |
| C1H3g20330 | 3:3,399,164-3,399,409 | + | C2H3g23028 | CX3g030853 | LOC_Os03g07590 | Os03g0172100 | - | Detail |
| C1H3g07122 | 3:3,400,003-3,403,602 | - | C2H3g09147 | CX3g029415 | LOC_Os03g07600 | Os03g0172200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g055556 | 9:7,934,942-7,936,461 | - | C1H9g06883 | C2H9g26718 | LOC_Os09g16590 | Os09g0339000 | - | Detail |
| CX9g056054 | 9:7,959,669-7,961,972 | + | C1H9g08185 | C2H9g08792 | LOC_Os09g16550 | Os09g0334900 | - | Detail |
| CX9g056154 | 9:7,963,273-7,966,505 | - | C1H9g02774 | C2H9g13074 | LOC_Os09g16540 | Os09g0334800 | - | Detail |
| CX9g056487 | 9:7,977,438-7,977,950 | + | C1H9g01191 | C2H9g18190 | LOC_Os09g16520 | Os09g0334600 | - | Detail |
| CX9g056065 | 9:7,979,868-7,981,489 | - | C1H9g09036 | C2H9g25170 | LOC_Os09g16510 | Os09g0334500 | WRKY74, OsWRKY74 | Detail |
| CX9g056750 | 9:8,030,525-8,038,514 | + | C1H9g26841 | C2H9g00499 | LOC_Os09g16449 | Os09g0333500 | OsPDR18, ABCG52 | Detail |
| CX9g055804 | 9:8,081,034-8,081,776 | + | - | - | - | - | - | Detail |
| CX9g056847 | 9:8,109,974-8,118,524 | + | C1H9g10386 | C2H9g07195 | LOC_Os09g16330 | Os09g0332700 | OsPDR20 | Detail |
| CX9g056308 | 9:8,159,688-8,160,200 | - | - | C2H9g09506 | LOC_Os09g16280 | Os09g0332100 | - | Detail |
| CX9g057842 | 9:8,167,783-8,170,315 | + | C1H9g03673 | C2H9g04185 | LOC_Os09g16260 | Os09g0331900 | - | Detail |
| CX9g054859 | 9:8,179,733-8,185,196 | + | C1H9g02563 | C2H9g23346 | LOC_Os09g16240 | Os09g0331600 | - | Detail |
| CX9g058030 | 9:8,216,102-8,216,497 | - | - | C2H9g07479 | LOC_Os09g16150 | - | - | Detail |
| CX9g058143 | 9:8,245,248-8,245,637 | - | - | - | - | - | - | Detail |
| CX9g056743 | 9:8,257,328-8,262,383 | - | C1H9g29313 | C2H9g03814 | LOC_Os09g16160 | Os09g0330700 | - | Detail |
| CX9g056395 | 9:8,262,598-8,262,750 | + | - | - | - | Os01g0728000 | - | Detail |
| CX9g058128 | 9:8,281,773-8,283,209 | + | C1H9g06647 | C2H9g08394 | LOC_Os09g16110 | Os09g0330000 | - | Detail |
| CX9g055579 | 9:8,293,512-8,294,987 | + | C1H9g19473 | C2H9g21003 | LOC_Os09g16030 | Os09g0329200 | - | Detail |
| CX9g055526 | 9:8,307,396-8,309,441 | - | - | C2H9g28887 | LOC_Os09g16010 | Os09g0329000 | - | Detail |
| CX9g055286 | 9:8,310,100-8,313,915 | - | C1H9g22823 | C2H9g23934 | LOC_Os09g16000 | Os09g0328951 | Pi56(t) | Detail |
| CX9g055473 | 9:8,320,387-8,326,152 | + | C1H9g29313 | C2H9g21414 | LOC_Os09g15950 | Os09g0328600 | - | Detail |