| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g17371 | 2:25,847,420-25,848,118 | + | C2H2g19834 | CX2g019917 | LOC_Os02g45880 | Os02g0684000 | - | Detail |
| C1H2g00614 | 2:25,856,212-25,857,291 | - | C2H2g12350 | CX2g020719 | LOC_Os02g45890 | Os02g0684100 | - | Detail |
| C1H2g03932 | 2:25,866,185-25,869,908 | - | C2H2g27051 | CX2g020860 | LOC_Os02g45900 | Os02g0684150 | OsDNA2_15 | Detail |
| C1H2g09273 | 2:25,873,513-25,878,112 | + | C2H2g04078 | CX2g021780 | LOC_Os02g45920 | Os02g0684300 | - | Detail |
| C1H2g23248 | 2:25,878,364-25,879,010 | - | C2H2g07890 | CX2g023573 | LOC_Os02g45930 | Os02g0684400 | - | Detail |
| C1H2g07518 | 2:25,883,906-25,884,217 | - | C2H2g23208 | CX2g023547 | LOC_Os02g45940 | Os02g0684500 | - | Detail |
| C1H2g17890 | 2:25,884,777-25,887,874 | + | C2H2g03417 | CX2g023866 | LOC_Os02g45950 | - | - | Detail |
| C1H2g27881 | 2:25,888,496-25,889,416 | + | C2H2g24497 | CX2g019320 | - | - | - | Detail |
| C1H2g13117 | 2:25,894,999-25,895,906 | - | - | - | - | - | - | Detail |
| C1H2g27343 | 2:25,896,349-25,902,473 | + | C2H2g17403 | CX2g023375 | LOC_Os02g45980 | Os02g0684900 | - | Detail |
| C1H2g11465 | 2:25,905,281-25,907,338 | + | C2H2g07817 | CX2g024528 | LOC_Os02g34860 | Os02g0117400 | - | Detail |
| C1H2g12344 | 2:25,909,079-25,910,160 | + | C2H7g03122 | CX6g042763 | LOC_Os06g08180 | Os06g0180000 | - | Detail |
| C1H2g24305 | 2:25,912,920-25,915,548 | - | C2H2g27686 | CX2g019726 | LOC_Os02g46030 | Os02g0685200 | OsMyb1R, LHY-like_chr.2, CMYB1 | Detail |
| C1H2g27920 | 2:25,926,682-25,929,229 | - | C2H2g27892 | CX2g023473 | LOC_Os02g46080 | Os02g0685600 | - | Detail |
| C1H2g28250 | 2:25,931,714-25,936,860 | + | C2H2g03411 | CX2g020113 | LOC_Os02g46090 | Os02g0685900 | OsCPK5 | Detail |
| C1H2g04547 | 2:25,949,272-25,953,342 | - | C2H2g06457 | CX2g020840 | LOC_Os02g46120 | Os02g0686300 | - | Detail |
| C1H2g29736 | 2:25,953,694-25,958,766 | + | C2H2g09278 | CX2g022035 | LOC_Os02g46130 | Os02g0686400 | - | Detail |
| C1H2g13130 | 2:25,961,734-25,962,164 | + | C2H2g01630 | CX2g023233 | LOC_Os02g46140 | Os02g0686500 | - | Detail |
| C1H2g25245 | 2:25,963,062-25,967,242 | - | C2H2g28721 | CX2g022938 | LOC_Os02g46150 | Os02g0686600 | - | Detail |
| C1H2g26309 | 2:25,974,048-25,974,414 | - | C2H2g18789 | CX2g019053 | LOC_Os02g46190 | Os02g0686700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g055200 | 9:7,373,711-7,374,026 | - | - | - | - | - | - | Detail |
| CX9g055679 | 9:7,398,055-7,398,459 | - | C1H9g07879 | C2H9g08842 | LOC_Os09g13040 | Os09g0305300 | - | Detail |
| CX9g055039 | 9:7,399,671-7,403,866 | - | C1H9g07879 | C2H9g29161 | LOC_Os02g03640 | - | - | Detail |
| CX9g057602 | 9:7,408,676-7,409,042 | + | C1H11g20372 | C2H9g09345 | LOC_Os10g01790 | - | - | Detail |
| CX9g055992 | 9:7,412,291-7,414,106 | + | C1H9g24944 | C2H9g30162 | LOC_Os09g17680 | Os09g0345700 | - | Detail |
| CX9g057683 | 9:7,418,380-7,419,303 | + | - | C2H9g16515 | - | Os09g0345600 | - | Detail |
| CX9g055256 | 9:7,422,666-7,422,884 | + | - | - | - | - | - | Detail |
| CX9g057967 | 9:7,429,611-7,438,110 | - | C1H9g12543 | C2H9g15758 | LOC_Os09g17630 | Os09g0345300 | - | Detail |
| CX9g055218 | 9:7,450,640-7,451,065 | + | C1H9g17730 | C2H9g02750 | LOC_Os09g17620 | Os09g0345000 | - | Detail |
| CX9g055119 | 9:7,451,655-7,452,675 | - | C1H9g04592 | C2H9g26356 | LOC_Os09g17610 | Os09g0344900 | - | Detail |
| CX9g058145 | 9:7,453,841-7,458,424 | - | C1H9g04200 | C2H9g04733 | LOC_Os09g17600 | Os09g0344800 | - | Detail |
| CX9g055220 | 9:7,468,402-7,468,986 | - | - | C2H9g27446 | LOC_Os09g17580 | Os09g0344700 | - | Detail |
| CX9g057390 | 9:7,471,767-7,471,925 | + | - | - | LOC_Os09g14560 | - | - | Detail |
| CX9g057496 | 9:7,476,236-7,477,422 | + | C1H9g00032 | C2H9g27875 | LOC_Os09g17560 | Os09g0344500 | OsASMT1 | Detail |
| CX9g056327 | 9:7,487,106-7,493,453 | + | C1H9g02588 | C2H9g23202 | LOC_Os09g16590 | Os09g0339000 | - | Detail |
| CX9g054838 | 9:7,532,312-7,533,646 | + | C1H9g22857 | C2H9g27256 | LOC_Os09g17190 | Os09g0342000 | - | Detail |
| CX9g056302 | 9:7,536,610-7,542,805 | + | C1H9g22857 | C2H9g04662 | LOC_Os09g17152 | Os09g0341600 | - | Detail |
| CX9g056506 | 9:7,587,221-7,587,793 | + | - | - | - | - | - | Detail |
| CX9g056015 | 9:7,610,519-7,610,728 | - | - | C2H9g06060 | - | - | - | Detail |
| CX9g058126 | 9:7,636,348-7,637,728 | + | C1H9g29313 | C2H9g06698 | LOC_Os09g17329 | Os09g0343200 | - | Detail |