| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g26939 | 3:5,827,730-5,829,663 | + | C2H3g21341 | CX3g025280 | LOC_Os03g12440 | - | - | Detail |
| C1H3g23318 | 3:5,830,907-5,831,606 | + | C2H3g03359 | CX3g025280 | LOC_Os03g12440 | - | - | Detail |
| C1H3g17135 | 3:5,832,929-5,841,582 | + | C2H3g24748 | CX3g030046 | LOC_Os03g12450 | Os03g0225500 | - | Detail |
| C1H3g25680 | 3:5,842,305-5,848,977 | + | C2H3g09129 | CX3g028144 | LOC_Os03g12460 | Os03g0225600 | - | Detail |
| C1H3g10808 | 3:5,850,410-5,855,399 | + | C2H3g02566 | CX3g025098 | LOC_Os03g12470 | Os03g0225700 | WAK25, OsWAK25 | Detail |
| C1H3g31142 | 3:5,859,958-5,861,394 | + | C2H3g16646 | CX3g026072 | LOC_Os03g12500 | Os03g0225900 | - | Detail |
| C1H3g02465 | 3:5,868,214-5,869,065 | - | C2H3g10692 | CX3g026153 | LOC_Os03g12510 | Os03g0226200 | Hb2, OsPgb1.2 | Detail |
| C1H3g31559 | 3:5,870,535-5,872,232 | + | C2H3g15869 | CX3g028573 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| C1H3g14266 | 3:5,872,381-5,872,951 | + | C2H3g08794 | CX3g028573 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| C1H3g15877 | 3:5,878,805-5,883,431 | + | C2H3g29082 | CX3g027606 | LOC_Os03g12530 | Os03g0226400 | - | Detail |
| C1H3g27940 | 3:5,889,656-5,896,396 | + | C2H3g13286 | CX3g025975 | LOC_Os03g12550 | Os03g0226600 | - | Detail |
| C1H3g15687 | 3:5,897,248-5,899,040 | - | C2H3g30568 | CX3g027982 | LOC_Os03g12560 | Os03g0226700 | - | Detail |
| C1H3g18854 | 3:5,900,286-5,906,068 | + | C2H3g00790 | CX3g024984 | LOC_Os03g12570 | Os03g0226800 | CMT3b | Detail |
| C1H3g26728 | 3:5,907,227-5,910,038 | + | C2H3g22427 | CX3g027871 | LOC_Os03g12570 | Os03g0226901 | - | Detail |
| C1H3g26232 | 3:5,913,957-5,921,379 | + | C2H3g07335 | CX3g030829 | LOC_Os03g12590 | Os03g0227000 | - | Detail |
| C1H3g22048 | 3:5,923,945-5,931,937 | + | C2H3g16667 | CX3g026050 | LOC_Os03g12610 | Os03g0227300 | - | Detail |
| C1H3g19915 | 3:5,932,012-5,935,453 | - | C2H3g04602 | CX3g031339 | LOC_Os03g12620 | Os03g0227400 | - | Detail |
| C1H3g13701 | 3:5,949,947-5,953,406 | + | C2H3g27028 | CX3g027265 | LOC_Os03g12630 | Os03g0227500 | - | Detail |
| C1H3g10637 | 3:5,969,729-5,976,810 | + | C2H3g25912 | CX3g027504 | LOC_Os03g12660 | Os03g0227700 | OsDWF4, OsDWARF4, CYP90B2 | Detail |
| C1H3g02053 | 3:5,978,556-5,981,087 | + | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g057271 | 9:6,857,877-6,858,189 | - | - | - | - | - | - | Detail |
| CX9g056635 | 9:6,858,881-6,872,811 | + | C1H9g15369 | C2H9g29911 | LOC_Os09g12350 | - | - | Detail |
| CX9g057157 | 9:6,876,187-6,877,644 | - | - | C2H9g24980 | LOC_Os09g12380 | Os09g0295000 | - | Detail |
| CX9g055369 | 9:6,924,269-6,928,306 | + | C1H9g09868 | C2H9g17607 | LOC_Os09g12500 | Os09g0296400 | - | Detail |
| CX9g055393 | 9:6,930,170-6,930,760 | + | C1H9g28667 | C2H9g14588 | LOC_Os09g12510 | Os09g0296500 | - | Detail |
| CX9g057641 | 9:6,933,259-6,933,660 | + | C1H9g22275 | C2H9g07479 | - | - | - | Detail |
| CX9g057610 | 9:6,935,392-6,937,604 | + | C1H9g04248 | C2H9g28255 | LOC_Os09g12530 | Os09g0296700 | - | Detail |
| CX9g056490 | 9:6,941,238-6,943,957 | + | C1H9g21187 | C2H9g16228 | LOC_Os09g12540 | Os09g0296800 | OsLhcb7 | Detail |
| CX9g056084 | 9:6,946,578-6,950,907 | + | C1H9g06139 | C2H9g17110 | LOC_Os09g12550 | Os09g0296900 | HSLG2 | Detail |
| CX9g058097 | 9:6,953,461-6,960,071 | + | C1H9g10693 | C2H9g04106 | LOC_Os09g12560 | Os09g0297000 | FC1 | Detail |
| CX9g054933 | 9:6,960,954-6,964,035 | - | C1H9g27717 | C2H9g24691 | LOC_Os09g12570 | Os09g0297100 | - | Detail |
| CX9g054925 | 9:6,967,318-6,968,889 | + | - | C2H9g06399 | LOC_Os09g12590 | Os09g0297300 | OsSTP24 | Detail |
| CX9g058188 | 9:6,972,530-6,975,568 | - | C1H9g22827 | C2H9g07019 | LOC_Os09g12600 | Os09g0297400 | PPT1, OsPPT1 | Detail |
| CX9g057576 | 9:6,982,524-6,983,623 | + | - | C2H9g08238 | - | - | - | Detail |
| CX9g054945 | 9:6,983,766-6,984,355 | - | C1H9g17081 | C2H9g10281 | LOC_Os09g12620 | Os09g0297800 | - | Detail |
| CX9g057472 | 9:6,985,265-6,985,957 | - | C1H9g28667 | C2H9g19494 | LOC_Os09g12630 | Os09g0297900 | - | Detail |
| CX9g056555 | 9:6,989,287-6,993,905 | + | C1H9g31684 | C2H9g30271 | LOC_Os09g12650 | Os09g0298100 | OsPFP1α4 | Detail |
| CX9g057527 | 9:6,995,252-6,999,042 | - | C1H9g00979 | C2H9g02028 | LOC_Os09g12660 | Os09g0298200 | - | Detail |
| CX9g056017 | 9:7,005,314-7,010,417 | + | C1H9g04278 | C2H9g04760 | LOC_Os09g12710 | Os09g0298400 | - | Detail |
| CX9g056522 | 9:7,012,265-7,016,810 | - | C1H9g29739 | C2H9g25888 | LOC_Os09g12720 | Os09g0298500 | - | Detail |