| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g24558 | 3:215,422-216,951 | + | C2H3g00666 | CX3g025803 | - | Os03g0103400 | - | Detail |
| C1H3g28077 | 3:226,654-228,073 | + | C2H3g07381 | CX3g025211 | LOC_Os03g01530 | Os03g0105600 | - | Detail |
| C1H3g23454 | 3:230,958-233,218 | - | C2H3g12984 | CX3g026334 | LOC_Os03g01540 | Os03g0105700 | OsAHL6 | Detail |
| C1H3g02722 | 3:234,782-238,690 | - | C2H3g00326 | CX3g030126 | LOC_Os03g01550 | Os03g0105800 | - | Detail |
| C1H3g03839 | 3:242,866-245,726 | - | C2H3g00355 | CX3g030694 | LOC_Os03g01570 | Os03g0106000 | - | Detail |
| C1H3g18280 | 3:247,522-252,767 | - | C2H3g00823 | CX3g029689 | LOC_Os03g01580 | Os03g0106200 | - | Detail |
| C1H3g03593 | 3:256,281-260,330 | - | C2H3g10053 | CX3g031070 | LOC_Os03g01590 | Os03g0106300 | PAIR1, Pair1 | Detail |
| C1H3g13137 | 3:260,921-265,419 | - | C2H3g14376 | CX3g025678 | LOC_Os03g01600 | Os03g0106400 | OsBCAT1 | Detail |
| C1H3g09448 | 3:273,006-273,809 | + | C2H3g19859 | CX3g025368 | LOC_Os03g01650 | Os03g0106500 | - | Detail |
| C1H3g20839 | 3:275,633-275,947 | + | C2H3g20988 | - | - | Os03g0106550 | - | Detail |
| C1H3g28471 | 3:278,533-279,336 | + | C2H3g29856 | CX3g030913 | LOC_Os03g01610 | Os03g0106900 | - | Detail |
| C1H3g09211 | 3:284,012-284,815 | + | C2H3g24000 | CX3g029182 | LOC_Os03g01640 | Os03g0106800 | - | Detail |
| C1H3g27934 | 3:287,197-288,000 | - | C2H3g19859 | CX3g029495 | LOC_Os03g01610 | Os03g0106900 | - | Detail |
| C1H3g02983 | 3:291,849-295,865 | - | C2H3g18319 | CX3g030834 | LOC_Os03g01660 | Os03g0107000 | - | Detail |
| C1H3g17953 | 3:297,610-299,591 | + | C2H3g12781 | CX3g025562 | LOC_Os03g01670 | Os03g0107100 | - | Detail |
| C1H3g31596 | 3:299,600-304,440 | + | C2H3g12928 | CX3g025562 | LOC_Os03g01670 | Os03g0107100 | - | Detail |
| C1H3g21747 | 3:306,940-308,391 | - | C2H3g02258 | CX3g026726 | LOC_Os03g01700 | Os03g0107300 | LSI2, Lsi2, SIET1, OsLsi2 | Detail |
| C1H3g27800 | 3:315,445-323,364 | + | C2H3g07101 | CX3g025905 | LOC_Os03g01710 | Os03g0107400 | - | Detail |
| C1H3g21135 | 3:327,587-331,824 | + | C2H3g28769 | CX3g028047 | LOC_Os03g01720 | Os03g0254900 | - | Detail |
| C1H3g04149 | 3:333,332-334,179 | + | C2H3g28769 | CX3g030693 | LOC_Os03g01720 | Os03g0107500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g057271 | 9:6,857,877-6,858,189 | - | - | - | - | - | - | Detail |
| CX9g056635 | 9:6,858,881-6,872,811 | + | C1H9g15369 | C2H9g29911 | LOC_Os09g12350 | - | - | Detail |
| CX9g057157 | 9:6,876,187-6,877,644 | - | - | C2H9g24980 | LOC_Os09g12380 | Os09g0295000 | - | Detail |
| CX9g055369 | 9:6,924,269-6,928,306 | + | C1H9g09868 | C2H9g17607 | LOC_Os09g12500 | Os09g0296400 | - | Detail |
| CX9g055393 | 9:6,930,170-6,930,760 | + | C1H9g28667 | C2H9g14588 | LOC_Os09g12510 | Os09g0296500 | - | Detail |
| CX9g057641 | 9:6,933,259-6,933,660 | + | C1H9g22275 | C2H9g07479 | - | - | - | Detail |
| CX9g057610 | 9:6,935,392-6,937,604 | + | C1H9g04248 | C2H9g28255 | LOC_Os09g12530 | Os09g0296700 | - | Detail |
| CX9g056490 | 9:6,941,238-6,943,957 | + | C1H9g21187 | C2H9g16228 | LOC_Os09g12540 | Os09g0296800 | OsLhcb7 | Detail |
| CX9g056084 | 9:6,946,578-6,950,907 | + | C1H9g06139 | C2H9g17110 | LOC_Os09g12550 | Os09g0296900 | HSLG2 | Detail |
| CX9g058097 | 9:6,953,461-6,960,071 | + | C1H9g10693 | C2H9g04106 | LOC_Os09g12560 | Os09g0297000 | FC1 | Detail |
| CX9g054933 | 9:6,960,954-6,964,035 | - | C1H9g27717 | C2H9g24691 | LOC_Os09g12570 | Os09g0297100 | - | Detail |
| CX9g054925 | 9:6,967,318-6,968,889 | + | - | C2H9g06399 | LOC_Os09g12590 | Os09g0297300 | OsSTP24 | Detail |
| CX9g058188 | 9:6,972,530-6,975,568 | - | C1H9g22827 | C2H9g07019 | LOC_Os09g12600 | Os09g0297400 | PPT1, OsPPT1 | Detail |
| CX9g057576 | 9:6,982,524-6,983,623 | + | - | C2H9g08238 | - | - | - | Detail |
| CX9g054945 | 9:6,983,766-6,984,355 | - | C1H9g17081 | C2H9g10281 | LOC_Os09g12620 | Os09g0297800 | - | Detail |
| CX9g057472 | 9:6,985,265-6,985,957 | - | C1H9g28667 | C2H9g19494 | LOC_Os09g12630 | Os09g0297900 | - | Detail |
| CX9g056555 | 9:6,989,287-6,993,905 | + | C1H9g31684 | C2H9g30271 | LOC_Os09g12650 | Os09g0298100 | OsPFP1α4 | Detail |
| CX9g057527 | 9:6,995,252-6,999,042 | - | C1H9g00979 | C2H9g02028 | LOC_Os09g12660 | Os09g0298200 | - | Detail |
| CX9g056017 | 9:7,005,314-7,010,417 | + | C1H9g04278 | C2H9g04760 | LOC_Os09g12710 | Os09g0298400 | - | Detail |
| CX9g056522 | 9:7,012,265-7,016,810 | - | C1H9g29739 | C2H9g25888 | LOC_Os09g12720 | Os09g0298500 | - | Detail |