| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g20143 | 1:31,987,794-31,990,960 | + | C2H1g09224 | CX1g000114 | LOC_Os01g62290 | Os01g0840100 | cHsp70-1 | Detail |
| C1H1g19514 | 1:31,992,421-31,993,980 | - | C2H1g21773 | CX1g000325 | LOC_Os01g62300 | Os01g0840200 | - | Detail |
| C1H1g29893 | 1:32,007,669-32,008,127 | - | C2H1g18215 | CX1g001065 | LOC_Os01g62310 | - | - | Detail |
| C1H1g00377 | 1:32,008,788-32,009,901 | - | C2H1g27558 | CX1g001065 | LOC_Os01g62310 | Os01g0840300 | - | Detail |
| C1H1g17139 | 1:32,017,474-32,019,413 | - | C2H1g18392 | CX1g004150 | LOC_Os01g62350 | Os01g0840700 | - | Detail |
| C1H1g12130 | 1:32,025,615-32,026,759 | + | C2H1g21625 | CX1g003133 | LOC_Os01g62370 | Os01g0841000 | - | Detail |
| C1H1g21585 | 1:32,032,310-32,033,584 | - | C2H1g05303 | CX1g001868 | LOC_Os01g62380 | Os01g0841100 | - | Detail |
| C1H1g08278 | 1:32,036,050-32,040,980 | - | C2H1g18206 | CX1g005410 | LOC_Os01g62390 | Os01g0841200 | - | Detail |
| C1H1g27442 | 1:32,048,806-32,054,280 | + | C2H1g01645 | CX1g006283 | LOC_Os01g62410 | Os01g0841500 | OsMYB3R-2, OsMYB3R2, MYB3R2 | Detail |
| C1H1g29013 | 1:32,054,965-32,057,733 | + | C2H1g14112 | CX1g001946 | LOC_Os01g62420 | Os01g0841600 | OscTPI | Detail |
| C1H1g20425 | 1:32,062,521-32,063,627 | + | C2H1g22797 | CX1g000812 | LOC_Os01g62430 | Os01g0841700 | OsERG1, OsERG1a, Rpp17-1 | Detail |
| C1H1g09787 | 1:32,064,224-32,071,896 | - | C2H1g16312 | CX1g005408 | LOC_Os01g62440 | Os01g0841800 | - | Detail |
| C1H1g04968 | 1:32,084,495-32,087,400 | + | C2H1g22514 | CX1g003735 | LOC_Os01g62460 | Os01g0842200 | - | Detail |
| C1H1g14751 | 1:32,092,309-32,095,261 | - | C2H1g04788 | CX1g004737 | LOC_Os01g62480 | Os01g0842400 | - | Detail |
| C1H1g07793 | 1:32,103,798-32,106,521 | - | C2H1g08845 | CX1g005658 | LOC_Os01g62490 | Os01g0842500 | - | Detail |
| C1H1g12370 | 1:32,108,857-32,114,415 | - | C2H1g06756 | CX1g000259 | LOC_Os01g62500 | Os01g0842600 | - | Detail |
| C1H1g05990 | 1:32,115,188-32,115,835 | - | C2H1g03150 | CX1g006004 | LOC_Os01g62510 | Os01g0972800 | - | Detail |
| C1H1g15936 | 1:32,119,622-32,120,266 | - | C2H1g11458 | CX1g006004 | LOC_Os01g62514 | Os01g0842801 | - | Detail |
| C1H1g02981 | 1:32,129,185-32,132,691 | - | C2H6g28684 | CX1g006531 | LOC_Os03g62810 | - | - | Detail |
| C1H1g19031 | 1:32,132,893-32,134,636 | - | C2H1g15515 | CX1g006003 | LOC_Os01g62530 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g057356 | 9:4,427,493-4,427,642 | - | - | - | LOC_Os12g33650 | Os11g0476333 | - | Detail |
| CX9g057382 | 9:4,433,789-4,433,938 | - | - | - | LOC_Os11g12240 | Os11g0476333 | - | Detail |
| CX9g054871 | 9:4,436,026-4,436,862 | + | C1H9g25599 | C2H9g20645 | LOC_Os09g08270 | Os09g0256650 | - | Detail |
| CX9g055272 | 9:4,444,516-4,445,649 | - | C1H9g05698 | C2H9g17919 | LOC_Os09g08520 | Os09g0259500 | - | Detail |
| CX9g057839 | 9:4,452,624-4,453,059 | - | - | C2H9g19724 | - | - | - | Detail |
| CX9g055049 | 9:4,472,439-4,473,074 | - | - | C2H9g17398 | - | Os09g0259701 | - | Detail |
| CX9g056751 | 9:4,476,703-4,479,165 | + | C1H9g05698 | C2H9g09812 | LOC_Os09g08550 | Os09g0260000 | - | Detail |
| CX9g054865 | 9:4,480,986-4,482,092 | + | C1H9g05698 | C2H9g04777 | LOC_Os09g08570 | Os09g0260200 | - | Detail |
| CX9g057100 | 9:4,517,822-4,519,174 | - | C1H9g05698 | C2H9g20407 | LOC_Os09g08620 | Os09g0261100 | - | Detail |
| CX9g056387 | 9:4,528,633-4,538,123 | - | C1H9g30517 | C2H9g15136 | LOC_Os09g08660 | Os09g0261300 | - | Detail |
| CX9g055912 | 9:4,549,476-4,563,161 | + | C1H9g04788 | - | LOC_Os09g08670 | Os09g0261400 | - | Detail |
| CX9g055157 | 9:4,584,997-4,588,631 | + | C1H9g27282 | C2H9g00830 | LOC_Os09g08720 | Os09g0262000 | - | Detail |
| CX9g056081 | 9:4,605,709-4,608,638 | - | C1H9g31888 | C2H9g28588 | LOC_Os09g08730 | - | - | Detail |
| CX9g055513 | 9:4,614,680-4,614,889 | + | - | - | LOC_Os09g08770 | - | - | Detail |
| CX9g055944 | 9:4,630,614-4,633,460 | - | C1H9g04333 | C2H9g30360 | LOC_Os09g08920 | Os09g0263933 | OsF3'H5 | Detail |
| CX9g057889 | 9:4,648,526-4,652,349 | + | - | C2H9g01105 | LOC_Os09g08960 | Os09g0264675 | - | Detail |
| CX9g056167 | 9:4,662,112-4,664,721 | - | C1H9g30168 | C2H9g20438 | LOC_Os09g08990 | Os09g0264400 | - | Detail |
| CX9g056560 | 9:4,682,249-4,686,917 | + | C1H9g00023 | C2H9g15012 | LOC_Os09g08720 | Os09g0262000 | - | Detail |
| CX9g057929 | 9:4,687,892-4,694,961 | - | C1H9g30452 | C2H9g04088 | LOC_Os09g07730 | Os09g0123300 | - | Detail |
| CX9g055239 | 9:4,721,963-4,728,035 | - | C1H9g15533 | C2H9g20232 | LOC_Os09g07730 | Os09g0123300 | - | Detail |