| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g19159 | 3:4,560,847-4,564,352 | + | C1H3g27623 | CX3g030601 | LOC_Os03g10190 | Os03g0198400 | - | Detail |
| C2H3g09921 | 3:4,570,322-4,572,644 | + | C1H3g02850 | CX3g031306 | LOC_Os03g10200 | Os03g0198500 | - | Detail |
| C2H3g24222 | 3:4,574,335-4,575,869 | - | C1H3g04729 | CX3g030929 | LOC_Os03g10210 | Os03g0198600 | HOX12, Oshox12, OsHox12, GT1 | Detail |
| C2H3g01513 | 3:4,585,572-4,585,963 | + | C1H3g24941 | - | - | - | - | Detail |
| C2H3g16295 | 3:4,593,765-4,595,784 | - | C1H3g23090 | CX3g026889 | LOC_Os03g10220 | - | - | Detail |
| C2H3g19804 | 3:4,596,596-4,599,606 | - | C1H3g13438 | CX3g026154 | LOC_Os03g10224 | Os03g0198900 | - | Detail |
| C2H3g09522 | 3:4,599,798-4,604,196 | + | C1H3g16749 | CX3g028745 | LOC_Os03g10230 | Os03g0199000 | - | Detail |
| C2H3g01585 | 3:4,609,414-4,610,589 | + | C1H3g12272 | CX3g029096 | LOC_Os03g10240 | Os03g0199100 | - | Detail |
| C2H3g23420 | 3:4,621,273-4,622,353 | - | C1H3g00274 | CX3g031305 | LOC_Os03g10260 | Os03g0199500 | - | Detail |
| C2H3g26891 | 3:4,639,608-4,640,847 | + | C1H3g07008 | CX3g025392 | LOC_Os03g10300 | Os03g0200000 | - | Detail |
| C2H3g01636 | 3:4,654,885-4,656,386 | + | C1H3g12286 | CX3g029912 | LOC_Os03g10320 | Os03g0200200 | - | Detail |
| C2H3g23926 | 3:4,662,597-4,663,344 | + | C1H3g29696 | CX3g028962 | - | - | - | Detail |
| C2H3g07176 | 3:4,664,495-4,666,798 | + | C1H3g13020 | CX3g025427 | LOC_Os03g10340 | Os03g0200500 | - | Detail |
| C2H3g17766 | 3:4,666,929-4,671,061 | - | C1H3g29298 | CX3g027963 | LOC_Os03g10350 | Os03g0200600 | OsTPR075 | Detail |
| C2H3g08890 | 3:4,673,665-4,676,594 | - | C1H3g01933 | CX3g025362 | LOC_Os03g10360 | Os03g0200700 | - | Detail |
| C2H3g09465 | 3:4,677,826-4,680,128 | - | C1H3g30301 | CX3g031231 | LOC_Os03g10370 | Os03g0200800 | - | Detail |
| C2H3g19650 | 3:4,683,420-4,685,696 | + | C1H3g28372 | CX3g028366 | LOC_Os03g10390 | Os03g0201000 | - | Detail |
| C2H3g21201 | 3:4,686,111-4,690,220 | - | C1H3g07769 | CX3g026809 | LOC_Os03g10400 | Os03g0201100 | - | Detail |
| C2H3g08749 | 3:4,690,383-4,692,431 | + | C1H3g03267 | - | LOC_Os03g10410 | Os03g0201200 | - | Detail |
| C2H3g27980 | 3:4,692,955-4,695,336 | + | C1H3g26783 | CX3g027641 | LOC_Os03g10420 | Os03g0201400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003790 | 1:29,758,394-29,760,967 | + | C1H1g07023 | C2H1g25310 | LOC_Os01g57550 | Os01g0784600 | - | Detail |
| CX1g000103 | 1:29,761,849-29,769,727 | - | C1H1g21188 | C2H1g01398 | LOC_Os01g57560 | Os01g0784700 | SDRLK-3 | Detail |
| CX1g002544 | 1:29,787,018-29,790,363 | + | C1H1g11148 | C2H1g01374 | LOC_Os01g57570 | Os01g0784800 | - | Detail |
| CX1g002670 | 1:29,794,538-29,796,472 | - | C1H1g11922 | C2H1g08294 | LOC_Os01g57580 | Os01g0784900 | NSP1, OsbHLH069 | Detail |
| CX1g003993 | 1:29,798,709-29,798,894 | - | C1H1g01971 | - | - | - | - | Detail |
| CX1g004249 | 1:29,807,132-29,807,746 | - | - | - | - | - | - | Detail |
| CX1g000324 | 1:29,818,182-29,818,358 | + | - | - | - | Os02g0188201 | - | Detail |
| CX1g005232 | 1:29,829,311-29,831,404 | + | C1H1g05872 | C2H1g21764 | LOC_Os01g57610 | Os01g0785400 | OsGH3.1, LC1 | Detail |
| CX1g002870 | 1:29,837,957-29,838,673 | - | C1H1g19150 | C2H1g24292 | LOC_Os01g57620 | Os01g0785600 | - | Detail |
| CX1g003522 | 1:29,838,878-29,840,206 | + | C1H1g10218 | C2H1g22636 | LOC_Os01g57630 | Os01g0785700 | - | Detail |
| CX1g000529 | 1:29,843,399-29,843,617 | + | - | - | - | - | - | Detail |
| CX1g000430 | 1:29,845,442-29,847,497 | - | C1H1g15011 | C2H1g16138 | LOC_Os01g57650 | Os01g0785900 | - | Detail |
| CX1g004678 | 1:29,851,479-29,851,652 | + | - | - | - | Os05g0505692 | - | Detail |
| CX1g001896 | 1:29,854,333-29,854,680 | + | - | - | LOC_Os01g57660 | Os01g0510200 | - | Detail |
| CX1g001412 | 1:29,857,244-29,858,073 | - | C1H1g29459 | C2H1g21172 | LOC_Os01g57690 | Os01g0786500 | - | Detail |
| CX1g005381 | 1:29,860,260-29,860,748 | - | C1H1g23885 | C2H1g07023 | - | - | - | Detail |
| CX1g004409 | 1:29,861,395-29,863,204 | - | C1H1g17182 | C2H1g14643 | LOC_Os01g57700 | Os01g0786700 | - | Detail |
| CX1g003027 | 1:29,864,598-29,867,496 | - | C1H1g27007 | C2H1g13333 | LOC_Os01g57710 | Os01g0786800 | - | Detail |
| CX1g000743 | 1:29,869,493-29,874,065 | - | C1H1g27007 | C2H1g14075 | LOC_Os01g57720 | Os01g0786900 | - | Detail |
| CX1g000500 | 1:29,883,657-29,885,073 | - | C1H1g05118 | C2H1g26053 | LOC_Os01g57730 | Os01g0787000 | - | Detail |