| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g27366 | 3:25,593,481-25,596,090 | + | C2H3g13044 | CX3g027834 | LOC_Os03g48010 | Os03g0684500 | - | Detail |
| C1H3g15233 | 3:25,596,794-25,598,680 | - | C2H3g22552 | CX3g025275 | LOC_Os03g48030 | Os03g0684700 | - | Detail |
| C1H3g05365 | 3:25,602,648-25,604,750 | + | C2H3g24042 | CX3g030044 | LOC_Os03g48040 | Os03g0685000 | OsFdC2, OsHDY1 | Detail |
| C1H3g13814 | 3:25,608,977-25,611,480 | + | C2H3g04933 | CX3g026303 | LOC_Os03g48050 | Os03g0685100 | - | Detail |
| C1H3g01967 | 3:25,628,711-25,631,971 | + | C2H3g27897 | CX3g027858 | LOC_Os03g48060 | Os03g0685300 | FLO19 | Detail |
| C1H3g16679 | 3:25,637,779-25,641,456 | - | C2H3g26335 | CX3g028901 | LOC_Os03g48080 | Os03g0685500 | - | Detail |
| C1H3g01229 | 3:25,641,900-25,645,954 | - | C2H3g24853 | CX3g029151 | LOC_Os03g48090 | Os03g0685600 | - | Detail |
| C1H3g02003 | 3:25,645,977-25,646,372 | - | C2H3g18835 | - | - | - | - | Detail |
| C1H3g30763 | 3:25,646,548-25,659,506 | + | C2H3g08146 | CX3g027759 | - | - | - | Detail |
| C1H3g16754 | 3:25,660,235-25,660,525 | + | - | - | LOC_Os03g48110 | Os03g0685900 | - | Detail |
| C1H3g31689 | 3:25,666,295-25,679,368 | - | C2H3g06193 | CX3g025545 | LOC_Os03g48140 | Os03g0686300 | - | Detail |
| C1H3g17077 | 3:25,685,933-25,689,140 | + | C2H3g15650 | CX3g025241 | LOC_Os03g48160 | Os03g0253100 | - | Detail |
| C1H3g31064 | 3:25,690,701-25,695,188 | + | C2H3g12008 | CX3g025276 | LOC_Os03g48170 | Os03g0686900 | FLO6 | Detail |
| C1H3g04074 | 3:25,695,859-25,701,417 | - | C2H3g19404 | CX3g025668 | LOC_Os03g51050 | Os03g0687000 | OsNPF2.4, NPF2.4, OsPTR2, PTR2 | Detail |
| C1H3g27780 | 3:25,713,193-25,717,194 | - | C2H3g17935 | CX3g029198 | LOC_Os03g48190 | Os03g0687200 | - | Detail |
| C1H3g31647 | 3:25,721,830-25,722,576 | - | C2H3g13078 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C1H3g02479 | 3:25,724,849-25,725,295 | - | C2H3g02466 | CX3g025750 | LOC_Os03g48225 | Os03g0687800 | - | Detail |
| C1H3g12014 | 3:25,727,294-25,728,022 | - | C2H3g05793 | CX3g028579 | LOC_Os03g48235 | Os03g0688000 | - | Detail |
| C1H3g12256 | 3:25,730,050-25,730,676 | - | C2H3g06136 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C1H3g24497 | 3:25,732,258-25,737,184 | + | C2H3g19874 | CX3g029090 | LOC_Os03g48260 | Os03g0688200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003790 | 1:29,758,394-29,760,967 | + | C1H1g07023 | C2H1g25310 | LOC_Os01g57550 | Os01g0784600 | - | Detail |
| CX1g000103 | 1:29,761,849-29,769,727 | - | C1H1g21188 | C2H1g01398 | LOC_Os01g57560 | Os01g0784700 | SDRLK-3 | Detail |
| CX1g002544 | 1:29,787,018-29,790,363 | + | C1H1g11148 | C2H1g01374 | LOC_Os01g57570 | Os01g0784800 | - | Detail |
| CX1g002670 | 1:29,794,538-29,796,472 | - | C1H1g11922 | C2H1g08294 | LOC_Os01g57580 | Os01g0784900 | NSP1, OsbHLH069 | Detail |
| CX1g003993 | 1:29,798,709-29,798,894 | - | C1H1g01971 | - | - | - | - | Detail |
| CX1g004249 | 1:29,807,132-29,807,746 | - | - | - | - | - | - | Detail |
| CX1g000324 | 1:29,818,182-29,818,358 | + | - | - | - | Os02g0188201 | - | Detail |
| CX1g005232 | 1:29,829,311-29,831,404 | + | C1H1g05872 | C2H1g21764 | LOC_Os01g57610 | Os01g0785400 | OsGH3.1, LC1 | Detail |
| CX1g002870 | 1:29,837,957-29,838,673 | - | C1H1g19150 | C2H1g24292 | LOC_Os01g57620 | Os01g0785600 | - | Detail |
| CX1g003522 | 1:29,838,878-29,840,206 | + | C1H1g10218 | C2H1g22636 | LOC_Os01g57630 | Os01g0785700 | - | Detail |
| CX1g000529 | 1:29,843,399-29,843,617 | + | - | - | - | - | - | Detail |
| CX1g000430 | 1:29,845,442-29,847,497 | - | C1H1g15011 | C2H1g16138 | LOC_Os01g57650 | Os01g0785900 | - | Detail |
| CX1g004678 | 1:29,851,479-29,851,652 | + | - | - | - | Os05g0505692 | - | Detail |
| CX1g001896 | 1:29,854,333-29,854,680 | + | - | - | LOC_Os01g57660 | Os01g0510200 | - | Detail |
| CX1g001412 | 1:29,857,244-29,858,073 | - | C1H1g29459 | C2H1g21172 | LOC_Os01g57690 | Os01g0786500 | - | Detail |
| CX1g005381 | 1:29,860,260-29,860,748 | - | C1H1g23885 | C2H1g07023 | - | - | - | Detail |
| CX1g004409 | 1:29,861,395-29,863,204 | - | C1H1g17182 | C2H1g14643 | LOC_Os01g57700 | Os01g0786700 | - | Detail |
| CX1g003027 | 1:29,864,598-29,867,496 | - | C1H1g27007 | C2H1g13333 | LOC_Os01g57710 | Os01g0786800 | - | Detail |
| CX1g000743 | 1:29,869,493-29,874,065 | - | C1H1g27007 | C2H1g14075 | LOC_Os01g57720 | Os01g0786900 | - | Detail |
| CX1g000500 | 1:29,883,657-29,885,073 | - | C1H1g05118 | C2H1g26053 | LOC_Os01g57730 | Os01g0787000 | - | Detail |