| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g27459 | 3:17,643,889-17,650,349 | - | C2H3g02896 | CX3g025874 | LOC_Os03g33590 | Os03g0448700 | - | Detail |
| C1H3g11876 | 3:17,701,003-17,705,075 | + | C2H3g09597 | CX3g025469 | LOC_Os03g33650 | Os03g0449200 | SHL4, SHO2, SHO2/SHL4, OsAGO7 | Detail |
| C1H3g10349 | 3:17,770,312-17,773,861 | - | C2H3g06387 | CX3g028866 | LOC_Os03g33012 | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C1H3g26549 | 3:17,780,356-17,780,712 | - | C2H3g24450 | - | - | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C1H3g16808 | 3:17,907,322-17,911,447 | - | C2H3g04259 | CX3g031079 | LOC_Os03g34040 | Os03g0452300 | - | Detail |
| C1H3g08800 | 3:17,973,712-17,976,997 | + | C2H3g20904 | CX3g026859 | LOC_Os03g34280 | Os03g0453800 | - | Detail |
| C1H3g06458 | 3:17,981,056-17,981,551 | + | C2H3g03414 | CX3g031021 | LOC_Os08g09860 | Os03g0786100 | - | Detail |
| C1H3g13672 | 3:17,981,611-17,986,020 | + | C2H3g06895 | CX3g026131 | - | Os03g0786100 | - | Detail |
| C1H3g14005 | 3:17,990,783-17,997,819 | - | C2H3g12265 | CX3g028089 | LOC_Os03g34300 | Os03g0454100 | - | Detail |
| C1H3g30334 | 3:18,065,445-18,075,548 | + | C2H3g24060 | CX3g029528 | - | Os03g0678400 | - | Detail |
| C1H3g23806 | 3:18,141,191-18,144,257 | + | C2H3g17975 | CX3g026576 | - | Os03g0759000 | - | Detail |
| C1H3g18625 | 3:18,369,083-18,384,635 | - | C2H3g10346 | CX3g027364 | LOC_Os03g35340 | Os03g0554900 | - | Detail |
| C1H3g29658 | 3:18,400,674-18,401,960 | - | C2H3g04971 | CX3g026045 | LOC_Os03g35370 | - | - | Detail |
| C1H3g29570 | 3:18,411,452-18,413,140 | - | C2H3g05979 | - | LOC_Os03g35454 | - | - | Detail |
| C1H3g05847 | 3:18,463,594-18,467,637 | + | C2H3g12208 | CX3g030899 | - | - | - | Detail |
| C1H3g05109 | 3:18,510,106-18,514,463 | + | C2H3g23939 | CX3g026628 | LOC_Os03g35600 | Os03g0556600 | SDRLK-20 | Detail |
| C1H3g10727 | 3:18,577,469-18,581,510 | + | C2H3g12208 | CX3g030899 | - | - | - | Detail |
| C1H3g15595 | 3:18,624,099-18,628,160 | + | C2H3g23939 | CX3g026628 | LOC_Os03g35600 | Os03g0556600 | SDRLK-20 | Detail |
| C1H3g27683 | 3:18,689,653-18,691,247 | - | C2H3g20317 | - | LOC_Os03g35620 | - | - | Detail |
| C1H3g27677 | 3:18,921,960-18,924,576 | - | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g055776 | 9:2,283,302-2,284,249 | - | C1H9g09088 | C2H9g26215 | LOC_Os09g04339 | Os09g0129600 | - | Detail |
| CX9g054970 | 9:2,315,829-2,316,824 | + | C1H9g09088 | C2H9g27183 | LOC_Os09g04430 | Os09g0130700 | - | Detail |
| CX9g054881 | 9:2,317,718-2,318,050 | - | - | - | - | - | - | Detail |
| CX9g056905 | 9:2,319,282-2,324,742 | - | - | C2H9g12382 | LOC_Os09g04440 | Os09g0130800 | - | Detail |
| CX9g057845 | 9:2,325,563-2,325,931 | + | - | - | - | Os09g0130901 | - | Detail |
| CX9g056218 | 9:2,333,645-2,334,100 | - | - | - | - | Os09g0131000 | - | Detail |
| CX9g055743 | 9:2,353,280-2,353,747 | + | - | - | - | - | - | Detail |
| CX9g055622 | 9:2,355,867-2,356,697 | + | C1H9g27936 | C2H9g22625 | LOC_Os09g04490 | Os09g0131200 | - | Detail |
| CX9g056587 | 9:2,397,229-2,408,742 | + | C1H9g00923 | C2H9g11221 | LOC_Os09g04624 | Os09g0132200 | - | Detail |
| CX9g055253 | 9:2,409,758-2,410,099 | - | - | - | - | - | - | Detail |
| CX9g055949 | 9:2,453,945-2,457,478 | - | C1H9g25123 | C2H9g26710 | LOC_Os09g04670 | Os09g0132600 | OsMORF8-1 | Detail |
| CX9g058101 | 9:2,465,687-2,468,087 | + | C1H9g00018 | C2H9g12342 | LOC_Os09g04710 | Os09g0132900 | - | Detail |
| CX9g056234 | 9:2,469,853-2,471,998 | - | C1H9g13386 | C2H9g28536 | LOC_Os09g04720 | Os09g0133000 | - | Detail |
| CX9g056571 | 9:2,477,940-2,482,302 | - | C1H9g21676 | C2H9g12722 | LOC_Os09g04730 | Os09g0133200 | - | Detail |
| CX9g055921 | 9:2,484,951-2,485,286 | - | - | C2H9g19729 | LOC_Os09g04760 | - | - | Detail |
| CX9g056741 | 9:2,490,905-2,491,348 | + | C1H9g18841 | C2H9g28504 | LOC_Os09g04790 | Os09g0133600 | - | Detail |
| CX9g056319 | 9:2,497,276-2,498,785 | + | C1H9g18841 | C2H9g02102 | LOC_Os09g04790 | Os09g0133600 | - | Detail |
| CX9g054843 | 9:2,535,181-2,538,603 | + | C1H9g06051 | C2H9g30446 | LOC_Os09g04800 | Os09g0133700 | - | Detail |
| CX9g057963 | 9:2,540,228-2,543,360 | - | C1H9g04091 | C2H9g23487 | LOC_Os09g04810 | Os09g0133800 | - | Detail |
| CX9g054889 | 9:2,564,095-2,564,361 | + | - | - | - | - | - | Detail |