| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g30676 | 3:20,784,935-20,789,025 | + | C1H3g31743 | CX3g027969 | LOC_Os03g40540 | Os03g0602300 | OsBRD1, OsDWARF | Detail |
| C2H3g17661 | 3:20,794,087-20,799,178 | + | C1H3g17649 | CX3g026097 | LOC_Os03g40550 | Os03g0602600 | HSA1, OsFLN2, HSA1/OsFLN2 | Detail |
| C2H3g06081 | 3:20,802,911-20,808,131 | - | C1H3g14588 | CX3g026160 | LOC_Os03g40610 | Os03g0603100 | - | Detail |
| C2H3g09028 | 3:20,872,653-20,876,352 | + | C1H3g26758 | CX3g029684 | LOC_Os03g40670 | Os03g0603600 | - | Detail |
| C2H3g19200 | 3:20,924,799-20,925,579 | + | C1H3g15118 | CX3g029136 | - | Os03g0789600 | - | Detail |
| C2H3g23447 | 3:20,937,852-20,939,276 | + | C1H3g27392 | CX3g025313 | LOC_Os03g40770 | Os03g0604566 | - | Detail |
| C2H3g01476 | 3:20,940,772-20,946,213 | - | C1H3g29572 | CX3g029068 | LOC_Os03g40780 | Os03g0604600 | - | Detail |
| C2H3g29089 | 3:20,994,865-20,996,867 | - | C1H3g15527 | CX3g025804 | LOC_Os03g40930 | Os03g0606100 | - | Detail |
| C2H3g00163 | 3:21,042,269-21,044,985 | - | C1H3g29161 | CX3g025127 | LOC_Os03g41064 | Os03g0208500 | NRAMP2, OsNramp2, OsNRAMP2 | Detail |
| C2H3g26892 | 3:21,057,321-21,057,773 | - | C1H3g01431 | - | LOC_Os03g41050 | Os03g0607100 | - | Detail |
| C2H3g02928 | 3:21,058,798-21,059,152 | - | C1H3g01550 | CX3g027262 | LOC_Os03g41060 | Os03g0607200 | - | Detail |
| C2H3g23130 | 3:21,068,563-21,070,046 | - | C1H12g22810 | - | - | - | - | Detail |
| C2H3g22608 | 3:21,085,564-21,088,849 | - | C1H3g28561 | CX3g025127 | LOC_Os03g41070 | Os03g0607400 | - | Detail |
| C2H3g05599 | 3:21,090,319-21,095,973 | + | C1H3g18716 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C2H3g06432 | 3:21,097,436-21,097,702 | + | C1H3g08205 | CX3g026140 | - | - | - | Detail |
| C2H3g18057 | 3:21,100,668-21,115,704 | + | C1H3g15026 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C2H3g23306 | 3:21,116,126-21,117,088 | - | C1H3g16629 | CX3g027100 | - | Os03g0653900 | - | Detail |
| C2H3g00656 | 3:21,209,983-21,210,727 | + | - | - | - | - | - | Detail |
| C2H3g10659 | 3:21,214,357-21,222,145 | - | C1H3g05229 | CX3g025340 | - | Os03g0680100 | - | Detail |
| C2H3g06565 | 3:21,284,912-21,286,026 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX9g056574 | 9:1,973,320-1,982,430 | + | C1H9g12801 | C2H9g16378 | LOC_Os09g03750 | Os09g0124800 | - | Detail |
| CX9g058061 | 9:1,973,664-1,973,912 | - | - | - | - | Os09g0124816 | - | Detail |
| CX9g057875 | 9:1,994,852-1,995,495 | - | C1H9g18385 | C2H9g09163 | LOC_Os09g03780 | Os02g0135850 | - | Detail |
| CX9g056038 | 9:2,008,533-2,008,777 | + | - | - | - | - | - | Detail |
| CX9g057169 | 9:2,010,147-2,010,782 | - | C1H9g04346 | C2H9g12670 | LOC_Os09g03810 | Os09g0125400 | - | Detail |
| CX9g055235 | 9:2,040,677-2,044,174 | + | C1H9g26448 | C2H9g17647 | LOC_Os09g03890 | Os09g0125828 | TAPE | Detail |
| CX9g057988 | 9:2,066,102-2,071,127 | - | C1H9g19601 | C2H9g30619 | LOC_Os09g03939 | Os09g0125900 | - | Detail |
| CX9g054980 | 9:2,118,466-2,118,759 | + | - | - | - | - | - | Detail |
| CX9g056311 | 9:2,119,551-2,120,291 | + | C1H9g10816 | C2H9g26990 | LOC_Os09g03990 | Os09g0126600 | - | Detail |
| CX9g055002 | 9:2,123,742-2,123,918 | + | - | - | - | Os02g0188201 | - | Detail |
| CX9g055011 | 9:2,140,285-2,140,893 | + | C1H9g06259 | C2H9g29380 | LOC_Os02g05790 | - | - | Detail |
| CX9g054979 | 9:2,150,697-2,153,657 | - | C1H9g15887 | C2H9g25521 | LOC_Os09g04050 | Os09g0127300 | OsCCR17 | Detail |
| CX9g057890 | 9:2,179,174-2,179,539 | - | - | C2H9g06710 | LOC_Os09g04100 | Os09g0127700 | - | Detail |
| CX9g055001 | 9:2,181,685-2,182,698 | + | - | C2H9g08238 | - | - | - | Detail |
| CX9g056004 | 9:2,194,315-2,199,131 | - | C1H9g16571 | C2H9g09431 | LOC_Os09g04110 | Os09g0127800 | - | Detail |
| CX9g055358 | 9:2,205,226-2,205,585 | - | - | - | - | - | - | Detail |
| CX9g057814 | 9:2,221,367-2,221,666 | + | C1H9g09485 | C2H9g23700 | LOC_Os11g20770 | Os02g0332450 | - | Detail |
| CX9g057437 | 9:2,227,253-2,232,597 | - | C1H9g16037 | C2H9g00209 | LOC_Os09g04160 | Os09g0128400 | - | Detail |
| CX9g055087 | 9:2,244,038-2,251,947 | - | C1H9g24985 | C2H9g03904 | LOC_Os09g04210 | Os09g0128600 | - | Detail |
| CX9g056204 | 9:2,259,581-2,260,534 | + | C1H9g09088 | C2H9g28638 | LOC_Os09g04310 | Os09g0129500 | - | Detail |