| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g18098 | 4:22,366,357-22,367,357 | + | C1H4g27983 | CX4g036341 | LOC_Os04g43710 | Os04g0517500 | - | Detail |
| C2H4g25250 | 4:22,371,472-22,373,949 | - | C1H4g02633 | CX4g031725 | LOC_Os04g43730 | Os04g0517700 | - | Detail |
| C2H4g17137 | 4:22,383,999-22,387,231 | - | C1H4g03662 | CX4g034141 | LOC_Os04g54890 | Os02g0517900 | - | Detail |
| C2H4g28659 | 4:22,395,708-22,396,055 | + | - | CX4g031509 | LOC_Os04g43740 | Os04g0517900 | - | Detail |
| C2H4g18845 | 4:22,398,118-22,401,716 | - | C1H4g21239 | CX4g032795 | LOC_Os04g43750 | Os04g0518000 | - | Detail |
| C2H4g17450 | 4:22,406,282-22,409,267 | - | C1H4g17678 | CX4g031424 | LOC_Os04g43760 | Os04g0518100 | - | Detail |
| C2H4g28869 | 4:22,415,229-22,417,846 | - | C1H4g22637 | CX4g031711 | LOC_Os04g43800 | Os04g0518400 | OsPAL6 | Detail |
| C2H4g10523 | 4:22,426,478-22,429,294 | - | C1H4g07857 | - | LOC_Os04g43824 | Os04g0518650 | - | Detail |
| C2H4g12982 | 4:22,438,115-22,441,881 | + | C1H4g21094 | CX4g035278 | LOC_Os04g43840 | Os04g0518800 | LABA1, LOGL6, OsLOGL6, An-2 | Detail |
| C2H4g03913 | 4:22,457,073-22,459,758 | + | C1H4g30028 | CX4g031681 | LOC_Os04g43910 | Os04g0519700 | ARF10, qSE4 | Detail |
| C2H4g13261 | 4:22,466,807-22,478,296 | - | C1H4g09015 | CX4g033896 | LOC_Os04g43916 | Os04g0519900 | - | Detail |
| C2H4g00328 | 4:22,479,350-22,483,931 | - | C1H4g07978 | CX4g033084 | LOC_Os04g43922 | Os04g0520000 | - | Detail |
| C2H4g21426 | 4:22,490,205-22,490,729 | - | - | CX4g032805 | LOC_Os04g43990 | Os04g0520700 | OsS40-13 | Detail |
| C2H4g11598 | 4:22,496,349-22,497,743 | + | C1H4g05728 | CX4g034414 | LOC_Os04g44030 | Os04g0520900 | - | Detail |
| C2H4g13133 | 4:22,504,372-22,506,431 | + | C1H4g29455 | CX4g032514 | LOC_Os04g44060 | Os04g0521100 | OsPIP2;3 | Detail |
| C2H4g21649 | 4:22,507,177-22,507,470 | - | C1H4g20974 | - | - | - | - | Detail |
| C2H4g30421 | 4:22,507,757-22,508,776 | - | C1H4g01962 | - | - | - | - | Detail |
| C2H4g17426 | 4:22,510,893-22,512,892 | + | C1H4g05956 | CX4g034857 | LOC_Os04g44070 | Os04g0521300 | - | Detail |
| C2H4g25112 | 4:22,513,844-22,516,546 | + | C1H4g04229 | CX4g032134 | LOC_Os04g44090 | Os04g0521600 | - | Detail |
| C2H4g09903 | 4:22,517,122-22,517,592 | + | - | CX4g032134 | LOC_Os04g44100 | Os04g0521700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g006979 | 1:29,423,507-29,424,415 | + | C1H1g00660 | - | LOC_Os01g56850 | Os01g0774100 | - | Detail |
| CX1g001413 | 1:29,425,341-29,428,909 | - | C1H1g06438 | C2H1g14722 | LOC_Os01g56860 | Os01g0776400 | - | Detail |
| CX1g006332 | 1:29,429,924-29,435,633 | + | C1H1g27574 | C2H1g29532 | LOC_Os01g56870 | Os01g0776500 | - | Detail |
| CX1g003899 | 1:29,436,584-29,440,008 | - | C1H1g22465 | C2H1g14944 | LOC_Os01g56880 | Os01g0776600 | - | Detail |
| CX1g000978 | 1:29,443,279-29,444,770 | - | C1H1g00597 | C2H1g21701 | LOC_Os01g56890 | Os01g0776700 | - | Detail |
| CX1g004792 | 1:29,447,850-29,456,079 | + | C1H1g11210 | C2H1g20224 | LOC_Os01g56910 | Os01g0777000 | - | Detail |
| CX1g004121 | 1:29,464,800-29,469,955 | + | C1H1g12823 | C2H1g02819 | LOC_Os01g56930 | Os01g0777200 | - | Detail |
| CX1g002623 | 1:29,471,318-29,477,565 | + | C1H1g24617 | C2H1g01868 | LOC_Os01g56940 | Os01g0777300 | OsEXO1 | Detail |
| CX1g005425 | 1:29,478,502-29,480,115 | + | C1H1g21107 | C2H1g09096 | LOC_Os01g56969 | Os01g0777400 | - | Detail |
| CX1g003121 | 1:29,481,088-29,497,035 | - | C1H1g01416 | C2H1g05939 | LOC_Os01g56980 | Os01g0777700 | - | Detail |
| CX1g001773 | 1:29,500,579-29,504,146 | - | C1H1g17868 | C2H1g00497 | LOC_Os01g56990 | Os01g0777800 | - | Detail |
| CX1g000485 | 1:29,509,570-29,511,743 | + | C1H1g03573 | C2H1g03254 | LOC_Os01g57020 | Os01g0778100 | - | Detail |
| CX1g004182 | 1:29,517,965-29,518,430 | - | C1H1g29247 | C2H1g01479 | LOC_Os01g57050 | Os01g0778500 | - | Detail |
| CX1g000574 | 1:29,532,248-29,537,907 | + | C1H1g15889 | C2H1g17230 | LOC_Os01g57066 | Os01g0778700 | - | Detail |
| CX1g003174 | 1:29,539,751-29,550,817 | + | C1H1g04670 | C2H1g28934 | LOC_Os01g57073 | Os01g0778800 | - | Detail |
| CX1g003472 | 1:29,551,218-29,551,457 | - | C1H1g30175 | - | - | Os01g0778900 | - | Detail |
| CX1g003351 | 1:29,557,045-29,567,984 | + | C1H1g04670 | C2H1g28562 | LOC_Os01g57082 | Os01g0778800 | - | Detail |
| CX1g000023 | 1:29,568,285-29,568,545 | - | C1H1g30175 | - | - | Os01g0778900 | - | Detail |
| CX1g005259 | 1:29,571,157-29,572,725 | - | - | - | - | Os01g0689975 | - | Detail |
| CX1g001051 | 1:29,574,263-29,583,797 | - | C1H1g04257 | C2H1g18551 | LOC_Os01g57110 | Os01g0779400 | OsCHR706, CHR706, ALT1 | Detail |