| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g21158 | 5:3,623,975-3,624,608 | + | C1H5g11504 | CX5g039717 | LOC_Os05g07890 | Os05g0171200 | - | Detail |
| C2H5g11975 | 5:3,627,760-3,631,414 | + | C1H5g14842 | CX5g038572 | LOC_Os05g07900 | Os05g0171300 | - | Detail |
| C2H5g28875 | 5:3,643,516-3,648,225 | + | C1H5g05810 | CX5g040454 | LOC_Os05g07940 | Os05g0171900 | - | Detail |
| C2H5g13205 | 5:3,651,409-3,654,605 | - | C1H5g06487 | CX5g040831 | LOC_Os05g08460 | Os05g0172400 | - | Detail |
| C2H5g23308 | 5:3,656,353-3,657,871 | - | C1H5g08333 | CX5g040831 | LOC_Os05g08450 | Os05g0172100 | - | Detail |
| C2H5g03657 | 5:3,661,533-3,666,669 | - | C1H5g28743 | CX5g037090 | LOC_Os05g16640 | Os05g0172300 | - | Detail |
| C2H5g01713 | 5:3,670,152-3,671,085 | - | C1H5g08333 | CX5g038351 | LOC_Os05g08460 | Os05g0172100 | - | Detail |
| C2H5g03936 | 5:3,673,425-3,674,783 | - | C1H5g08333 | CX5g038351 | LOC_Os05g08460 | Os05g0172500 | - | Detail |
| C2H5g23228 | 5:3,675,087-3,679,300 | - | - | - | - | - | - | Detail |
| C2H5g07835 | 5:3,694,894-3,697,834 | + | C1H5g27827 | CX5g040996 | LOC_Os05g08360 | Os05g0176000 | - | Detail |
| C2H5g15897 | 5:3,701,544-3,707,799 | - | C1H5g22753 | CX5g038136 | LOC_Os05g08370 | Os05g0176100 | - | Detail |
| C2H5g24531 | 5:3,717,128-3,719,693 | - | C1H5g02275 | CX5g040050 | LOC_Os05g08400 | Os05g0176400 | - | Detail |
| C2H5g15763 | 5:3,721,229-3,724,376 | - | C1H5g15996 | CX5g039063 | LOC_Os05g08410 | Os05g0176500 | - | Detail |
| C2H5g16673 | 5:3,724,603-3,727,063 | + | C1H5g19736 | CX5g039906 | LOC_Os05g08414 | Os05g0176600 | - | Detail |
| C2H5g23491 | 5:3,737,592-3,746,147 | - | C1H5g07740 | CX5g039146 | LOC_Os05g08430 | Os05g0176800 | BOR4, OsBOR4 | Detail |
| C2H5g22969 | 5:3,749,211-3,750,383 | + | C1H5g26361 | CX5g040267 | LOC_Os05g08450 | Os05g0177100 | - | Detail |
| C2H5g14876 | 5:3,758,901-3,762,453 | - | C1H5g26361 | CX5g041067 | LOC_Os05g08460 | Os05g0177400 | - | Detail |
| C2H5g00540 | 5:3,762,539-3,762,860 | - | C1H5g18386 | - | - | - | - | Detail |
| C2H5g23095 | 5:3,783,972-3,787,537 | + | C1H5g12562 | CX5g040475 | LOC_Os05g08490 | Os05g0177800 | - | Detail |
| C2H5g03109 | 5:3,794,716-3,795,736 | + | C1H5g05273 | CX5g039674 | LOC_Os05g08530 | Os05g0178000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX8g053214 | 8:20,753,886-20,754,770 | + | C1H8g09056 | C2H8g13904 | LOC_Os08g37760 | Os08g0484200 | - | Detail |
| CX8g053305 | 8:20,756,335-20,756,505 | + | - | - | - | Os08g0484300 | - | Detail |
| CX8g052694 | 8:20,760,438-20,767,440 | - | C1H8g11144 | C2H8g07782 | LOC_Os08g37780 | Os08g0484400 | - | Detail |
| CX8g050930 | 8:20,768,412-20,771,624 | - | C1H8g28521 | C2H8g28642 | LOC_Os08g37790 | Os08g0484500 | - | Detail |
| CX8g051810 | 8:20,772,985-20,773,134 | - | - | - | - | - | - | Detail |
| CX8g054447 | 8:20,774,422-20,774,679 | - | - | C2H8g02027 | - | - | - | Detail |
| CX8g053838 | 8:20,775,609-20,779,077 | + | C1H8g08760 | C2H8g04029 | LOC_Os08g37800 | Os08g0484600 | OSK4, osk4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK4 | Detail |
| CX8g051319 | 8:20,784,795-20,784,974 | + | - | - | - | - | - | Detail |
| CX8g054252 | 8:20,786,533-20,790,097 | + | C1H8g07271 | C2H8g21066 | LOC_Os08g37820 | Os08g0484800 | - | Detail |
| CX8g053978 | 8:20,792,968-20,793,219 | - | - | - | - | - | - | Detail |
| CX8g052720 | 8:20,799,439-20,800,437 | + | - | - | - | - | - | Detail |
| CX8g054237 | 8:20,809,553-20,816,477 | + | C1H8g08354 | C2H8g11309 | LOC_Os08g37874 | Os08g0485400 | - | Detail |
| CX8g050461 | 8:20,820,404-20,820,885 | + | C1H8g24443 | C2H8g09800 | LOC_Os08g37890 | Os08g0485500 | RAE2, OsEPFL1, EPFL1, GAD1 | Detail |
| CX8g054267 | 8:20,823,647-20,828,628 | + | C1H8g08175 | C2H8g22834 | LOC_Os08g37904 | Os08g0485600 | - | Detail |
| CX8g053049 | 8:20,844,305-20,849,365 | + | C1H8g13898 | C2H8g11998 | LOC_Os08g37920 | Os08g0485700 | - | Detail |
| CX8g053483 | 8:20,851,189-20,853,436 | - | C1H8g11808 | C2H8g20917 | LOC_Os08g37930 | Os08g0485800 | - | Detail |
| CX8g052013 | 8:20,854,932-20,857,986 | - | C1H8g21083 | C2H8g01955 | LOC_Os08g37940 | Os08g0485900 | - | Detail |
| CX8g054609 | 8:20,859,965-20,867,561 | + | C1H8g12876 | C2H8g06885 | LOC_Os08g37950 | Os08g0486100 | - | Detail |
| CX8g050748 | 8:20,868,505-20,872,081 | - | C1H8g09919 | C2H8g17660 | LOC_Os08g37960 | Os08g0486200 | - | Detail |
| CX8g052173 | 8:20,880,567-20,882,121 | - | C1H8g05150 | C2H8g28570 | LOC_Os08g37970 | Os08g0486300 | Os2R_MYB80 | Detail |