| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g02049 | 9:18,813,094-18,814,433 | - | - | - | - | - | - | Detail |
| C2H9g02251 | 9:18,815,851-18,826,481 | + | C1H9g30681 | CX9g057664 | LOC_Os09g38440 | Os09g0556700 | - | Detail |
| C2H9g19914 | 9:18,826,598-18,828,778 | - | C1H9g19768 | CX9g058159 | LOC_Os09g38450 | Os09g0556800 | - | Detail |
| C2H9g21049 | 9:18,832,567-18,834,307 | + | C1H9g29064 | CX9g054863 | LOC_Os09g38470 | Os09g0558600 | - | Detail |
| C2H9g08319 | 9:18,841,636-18,843,266 | + | C1H9g16942 | CX9g057682 | LOC_Os09g38490 | Os09g0558600 | - | Detail |
| C2H9g11110 | 9:18,847,404-18,848,254 | - | C1H9g30179 | CX9g057136 | LOC_Os09g38500 | Os09g0557400 | - | Detail |
| C2H9g27079 | 9:18,849,081-18,850,151 | - | C1H9g28316 | CX9g055644 | LOC_Os09g38510 | Os09g0557500 | - | Detail |
| C2H9g25699 | 9:18,852,559-18,855,228 | - | C1H9g26334 | CX9g055537 | LOC_Os09g38520 | Os09g0557700 | OsCYBDOMG1 | Detail |
| C2H9g21071 | 9:18,861,316-18,865,259 | + | C1H9g29950 | CX9g056733 | LOC_Os09g38530 | Os09g0557800 | - | Detail |
| C2H9g22541 | 9:18,866,465-18,867,065 | + | C1H9g31843 | CX9g056091 | LOC_Os09g38540 | Os09g0557900 | - | Detail |
| C2H9g09128 | 9:18,867,627-18,875,405 | - | C1H9g10993 | CX9g055672 | LOC_Os09g38550 | Os09g0558000 | - | Detail |
| C2H9g29195 | 9:18,875,356-18,876,431 | + | C1H9g23233 | CX9g055091 | LOC_Os09g38560 | Os09g0558100 | - | Detail |
| C2H9g24336 | 9:18,883,416-18,886,928 | + | C1H9g06849 | CX9g057634 | LOC_Os09g38570 | Os09g0558200 | - | Detail |
| C2H9g29603 | 9:18,888,298-18,892,870 | + | C1H9g11940 | CX9g057885 | LOC_Os09g38580 | Os09g0558300 | - | Detail |
| C2H9g25482 | 9:18,893,479-18,894,738 | + | C1H9g18523 | CX9g054863 | LOC_Os09g38600 | Os09g0558600 | - | Detail |
| C2H9g28361 | 9:18,895,780-18,897,602 | + | C1H9g23887 | CX9g054863 | LOC_Os09g38600 | Os09g0558600 | - | Detail |
| C2H9g08101 | 9:18,905,497-18,911,619 | - | C1H9g12892 | CX9g057540 | LOC_Os09g38620 | Os09g0558900 | - | Detail |
| C2H9g14835 | 9:18,918,631-18,919,830 | - | C1H9g13819 | CX9g057198 | LOC_Os09g38650 | Os09g0559200 | - | Detail |
| C2H9g07140 | 9:18,923,889-18,924,520 | + | - | - | - | - | - | Detail |
| C2H9g17578 | 9:18,924,546-18,925,099 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003778 | 1:28,332,108-28,332,320 | - | - | - | - | - | - | Detail |
| CX1g005575 | 1:28,333,146-28,335,655 | - | C1H1g10544 | C2H1g26286 | LOC_Os01g55120 | Os01g0756000 | - | Detail |
| CX1g006243 | 1:28,343,333-28,345,424 | + | C1H1g21888 | C2H1g27103 | LOC_Os01g55150 | Os01g0756200 | - | Detail |
| CX1g001072 | 1:28,347,614-28,348,162 | - | - | - | LOC_Os01g55160 | Os01g0756300 | - | Detail |
| CX1g003911 | 1:28,353,190-28,363,008 | - | C1H1g02918 | C2H1g30168 | LOC_Os01g55170 | Os01g0756400 | - | Detail |
| CX1g003221 | 1:28,368,555-28,372,068 | + | C1H1g08295 | C2H1g05126 | LOC_Os01g55190 | Os01g0531400 | - | Detail |
| CX1g002081 | 1:28,381,875-28,384,168 | + | C1H1g21813 | C2H1g22597 | LOC_Os01g55200 | Os01g0756700 | KAT1, OsKAT1 | Detail |
| CX1g004631 | 1:28,387,270-28,387,656 | + | - | - | - | Os01g0756900 | - | Detail |
| CX1g004140 | 1:28,402,436-28,404,204 | + | C1H1g15032 | C2H1g23299 | LOC_Os01g55240 | Os01g0757200 | GA2OX3, OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3 | Detail |
| CX1g001582 | 1:28,406,011-28,406,184 | + | - | - | - | - | - | Detail |
| CX1g001542 | 1:28,418,785-28,422,523 | + | C1H1g13228 | C2H1g18562 | LOC_Os01g55260 | Os01g0757400 | - | Detail |
| CX1g000631 | 1:28,423,175-28,425,965 | - | C1H1g20677 | C2H1g15915 | LOC_Os01g55270 | Os01g0757500 | - | Detail |
| CX1g004257 | 1:28,432,705-28,434,020 | - | C1H1g01435 | C2H1g24400 | LOC_Os01g55280 | Os01g0757600 | - | Detail |
| CX1g006495 | 1:28,442,928-28,446,633 | - | C1H1g01756 | C2H1g24899 | LOC_Os01g55290 | Os01g0757700 | - | Detail |
| CX1g003762 | 1:28,446,795-28,451,730 | + | C1H1g09106 | C2H1g22215 | LOC_Os01g55300 | Os01g0757800 | - | Detail |
| CX1g005426 | 1:28,452,490-28,455,625 | - | C1H1g06019 | C2H1g22679 | LOC_Os01g55310 | Os01g0757900 | - | Detail |
| CX1g002989 | 1:28,456,897-28,457,573 | - | C1H1g04207 | C2H1g13025 | LOC_Os01g55320 | Os01g0758000 | - | Detail |
| CX1g000088 | 1:28,458,537-28,458,692 | + | - | - | LOC_Os01g54280 | Os01g0930300 | - | Detail |
| CX1g007259 | 1:28,469,629-28,469,868 | - | - | - | - | - | - | Detail |
| CX1g006023 | 1:28,476,102-28,481,422 | - | C1H1g13262 | C2H1g30086 | LOC_Os01g55350 | Os01g0758300 | - | Detail |