| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g15956 | 1:29,170,228-29,173,645 | - | C1H1g07828 | CX1g003614 | LOC_Os01g56610 | Os01g0772900 | - | Detail |
| C2H1g02136 | 1:29,173,682-29,173,900 | - | C1H1g30082 | - | LOC_Os01g56610 | Os01g0772900 | - | Detail |
| C2H1g09458 | 1:29,176,950-29,183,491 | - | C1H1g09709 | CX1g004434 | LOC_Os01g56620 | Os01g0773000 | - | Detail |
| C2H1g21996 | 1:29,186,529-29,193,189 | + | C1H1g18004 | CX1g004749 | LOC_Os01g56630 | Os01g0773100 | - | Detail |
| C2H1g11734 | 1:29,193,639-29,198,491 | - | C1H1g16449 | CX1g003963 | LOC_Os01g56640 | Os01g0773200 | - | Detail |
| C2H1g10774 | 1:29,210,331-29,214,923 | + | C1H1g12399 | CX1g004844 | LOC_Os01g56660 | Os01g0773400 | - | Detail |
| C2H1g03074 | 1:29,216,871-29,226,330 | + | C1H1g25447 | CX1g006651 | LOC_Os01g56670 | Os01g0773600 | - | Detail |
| C2H1g21720 | 1:29,226,511-29,226,982 | - | C1H1g04938 | CX1g003264 | LOC_Os01g56680 | Os01g0773700 | - | Detail |
| C2H1g17726 | 1:29,231,475-29,233,392 | + | C1H1g10427 | CX1g001968 | LOC_Os01g56690 | Os01g0773800 | - | Detail |
| C2H1g17588 | 1:29,253,985-29,255,375 | + | C1H1g31091 | CX1g000210 | LOC_Os01g56730 | Os01g0774200 | - | Detail |
| C2H1g05538 | 1:29,258,827-29,263,431 | - | C1H1g22747 | CX1g003188 | LOC_Os01g56764 | Os01g0774500 | - | Detail |
| C2H1g19867 | 1:29,264,809-29,270,524 | - | C1H1g31324 | CX1g002704 | LOC_Os01g56780 | Os01g0775100 | OsPL3 | Detail |
| C2H1g25542 | 1:29,280,778-29,285,466 | + | C1H1g21773 | CX1g002735 | LOC_Os01g56790 | - | - | Detail |
| C2H1g25551 | 1:29,285,804-29,295,830 | - | C1H1g07124 | CX1g006221 | LOC_Os01g56800 | Os01g0775300 | - | Detail |
| C2H1g29104 | 1:29,304,566-29,305,249 | - | C1H1g18472 | CX1g003603 | LOC_Os01g56810 | Os01g0775400 | OsCKX5 | Detail |
| C2H1g14598 | 1:29,305,652-29,306,817 | - | C1H1g18472 | CX1g003603 | LOC_Os01g56810 | Os01g0775400 | OsCKX5 | Detail |
| C2H1g15615 | 1:29,307,389-29,308,573 | - | C1H1g18472 | CX1g003603 | LOC_Os01g56810 | Os01g0775400 | OsCKX5 | Detail |
| C2H1g13983 | 1:29,328,642-29,336,924 | - | C1H1g22596 | CX1g005751 | LOC_Os01g51050 | Os01g0775500 | - | Detail |
| C2H1g14722 | 1:29,345,950-29,350,017 | - | C1H1g06438 | CX1g001413 | LOC_Os01g56860 | Os01g0776400 | - | Detail |
| C2H1g29532 | 1:29,352,350-29,355,916 | + | C1H1g27574 | CX1g006332 | LOC_Os01g56870 | Os01g0776500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003778 | 1:28,332,108-28,332,320 | - | - | - | - | - | - | Detail |
| CX1g005575 | 1:28,333,146-28,335,655 | - | C1H1g10544 | C2H1g26286 | LOC_Os01g55120 | Os01g0756000 | - | Detail |
| CX1g006243 | 1:28,343,333-28,345,424 | + | C1H1g21888 | C2H1g27103 | LOC_Os01g55150 | Os01g0756200 | - | Detail |
| CX1g001072 | 1:28,347,614-28,348,162 | - | - | - | LOC_Os01g55160 | Os01g0756300 | - | Detail |
| CX1g003911 | 1:28,353,190-28,363,008 | - | C1H1g02918 | C2H1g30168 | LOC_Os01g55170 | Os01g0756400 | - | Detail |
| CX1g003221 | 1:28,368,555-28,372,068 | + | C1H1g08295 | C2H1g05126 | LOC_Os01g55190 | Os01g0531400 | - | Detail |
| CX1g002081 | 1:28,381,875-28,384,168 | + | C1H1g21813 | C2H1g22597 | LOC_Os01g55200 | Os01g0756700 | KAT1, OsKAT1 | Detail |
| CX1g004631 | 1:28,387,270-28,387,656 | + | - | - | - | Os01g0756900 | - | Detail |
| CX1g004140 | 1:28,402,436-28,404,204 | + | C1H1g15032 | C2H1g23299 | LOC_Os01g55240 | Os01g0757200 | GA2OX3, OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3 | Detail |
| CX1g001582 | 1:28,406,011-28,406,184 | + | - | - | - | - | - | Detail |
| CX1g001542 | 1:28,418,785-28,422,523 | + | C1H1g13228 | C2H1g18562 | LOC_Os01g55260 | Os01g0757400 | - | Detail |
| CX1g000631 | 1:28,423,175-28,425,965 | - | C1H1g20677 | C2H1g15915 | LOC_Os01g55270 | Os01g0757500 | - | Detail |
| CX1g004257 | 1:28,432,705-28,434,020 | - | C1H1g01435 | C2H1g24400 | LOC_Os01g55280 | Os01g0757600 | - | Detail |
| CX1g006495 | 1:28,442,928-28,446,633 | - | C1H1g01756 | C2H1g24899 | LOC_Os01g55290 | Os01g0757700 | - | Detail |
| CX1g003762 | 1:28,446,795-28,451,730 | + | C1H1g09106 | C2H1g22215 | LOC_Os01g55300 | Os01g0757800 | - | Detail |
| CX1g005426 | 1:28,452,490-28,455,625 | - | C1H1g06019 | C2H1g22679 | LOC_Os01g55310 | Os01g0757900 | - | Detail |
| CX1g002989 | 1:28,456,897-28,457,573 | - | C1H1g04207 | C2H1g13025 | LOC_Os01g55320 | Os01g0758000 | - | Detail |
| CX1g000088 | 1:28,458,537-28,458,692 | + | - | - | LOC_Os01g54280 | Os01g0930300 | - | Detail |
| CX1g007259 | 1:28,469,629-28,469,868 | - | - | - | - | - | - | Detail |
| CX1g006023 | 1:28,476,102-28,481,422 | - | C1H1g13262 | C2H1g30086 | LOC_Os01g55350 | Os01g0758300 | - | Detail |